Browse Element(s) Details


OsAffx.32247.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=ccmC
TID=OsAffx.32247.1
CNT=1
FEA=DNA_12
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome c biogenesis C (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Cytochrome c biogenesis C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3401011/11Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34010OsAffx.32248.1.S1_x_at11/1112+20503661..20505169Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
LOC_Os12g34010OsAffx.32247.1.S1_x_at11/1112+20503661..20505169Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
LOC_Os12g34019NANA12+20508109..20508631NA
LOC_Os12g34030OsAffx.26050.28.S1_s_at11/1112+20516325..20517516hypothetical protein
LOC_Os12g34040OsAffx.32344.1.S1_at5/1112+20517912..20519016retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0008535biological_processcytochrome c oxidase complex assembly
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32247.1.S1_x_at--31--10311Chr12:20504604..20504628 (25 bp)
TTTCGTATGTACATGTTCCTGCGGC
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--710--8612Chr12:20504734..20504758 (25 bp)
TGGTGCTTTTTCTACTTTGTTTACG
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--77--7491Chr12:20504809..20504833 (25 bp)
GTGGGATGCTCGTTTAACTTCTGTA
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--815--10791Chr12:20504840..20504864 (25 bp)
TTGTTTCTTATTTACCTGGGTGCAC
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--423--7712Chr12:20504857..20504881 (25 bp)
GGGTGCACTGCGTTTTCAAAAGCTT
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--1021--10312Chr12:20504870..20504894 (25 bp)
TTTCAAAAGCTTCCTGTCGAACCGG
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--931--551Chr12:20504906..20504930 (25 bp)
ATCCGTGCTGGACCGATCGATATAC
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--70--3091Chr12:20504960..20504984 (25 bp)
AATACATCGCATCAACCTGGGAGTA
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--1067--9731Chr12:20505002..20505026 (25 bp)
TCAATACATGTTCCTATGCCCATTC
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--792--9511Chr12:20505030..20505054 (25 bp)
TCTTGTCTAACTTTGCTAACTTCCC
LOC_Os12g34010
OsAffx.32247.1.S1_x_at--381--9951Chr12:20505061..20505085 (25 bp)
TACCCGTATCTTGTTCGTTCTGGAA
LOC_Os12g34010
Target Sequence 
TTTCGTATGTACATGTTCCTGCGGCTCGGATGAGTATAGTTATTTATATCGCGACAGCTATAAACAGTTCCTTGTTCCCA
TTAACAAAACATCCCCTTTTTCTTCGCTCTTCCGGAACCGGTACAGAAATTGGTGCTTTTTCTACTTTGTTTACGTTAGT
GACTGGGGGATTTCGGGGAAGGCCTATGTGGGGTACCTTTCGGGTGTGGGATGCTCGTTTAACTTCTGTATTCATCTTGT
TTCTTATTTACCTGGGTGCACTGCGTTTTCAAAAGCTTCCTGTCGAACCGGCTCCTATTTCAATCCGTGCTGGACCGATC
GATATACCAATAATAAAGTCTCCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGTATTAGCCGATCTGGTACATC
AATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCTAACTTCCCCTTCTCTACCCGTATCTTGTTCGTTCTGG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32247.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis