Browse Element(s) Details


OsAffx.32248.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=orf183
TID=OsAffx.32248.1
CNT=1
FEA=DNA_13
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=orf183 (Oryza sativa (japonica cultivar-group)) mitochondrion
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3401011/11Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34010OsAffx.32248.1.S1_x_at11/1112+20503661..20505169Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
LOC_Os12g34010OsAffx.32247.1.S1_x_at11/1112+20503661..20505169Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
LOC_Os12g34019NANA12+20508109..20508631NA
LOC_Os12g34030OsAffx.26050.28.S1_s_at11/1112+20516325..20517516hypothetical protein
LOC_Os12g34040OsAffx.32344.1.S1_at5/1112+20517912..20519016retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0008535biological_processcytochrome c oxidase complex assembly
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32248.1.S1_x_at--828--6471Chr12:20503727..20503751 (25 bp)
GATACAGTAGCGCAGAGCCCATACA
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--639--3572Chr12:20503750..20503774 (25 bp)
CATAGGGCTTATTCGCGCTGTAGAG
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--334--2792Chr12:20503785..20503809 (25 bp)
AAGAGGGAGATGGACCTGCCCCAGC
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--570--1112Chr12:20503847..20503871 (25 bp)
AGTGAAAGGCTCTCCTCGTCGGGCT
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--769--3992Chr12:20503862..20503886 (25 bp)
TCGTCGGGCTCATCGGTAAACCAAC
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--360--2371Chr12:20503879..20503903 (25 bp)
AAACCAACCTGAGCCGTTGACACAG
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--47--6353Chr12:20503916..20503940 (25 bp)
GATGCTGTGACCTATGAGAGCCCAA
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--62--3433Chr12:20503980..20504004 (25 bp)
CAGTAACTGATTTGGCGAGCCCCTT
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--69--2972Chr12:20504029..20504053 (25 bp)
AATGGATCTTCTTATGGGCAACTAT
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--883--233Chr12:20504130..20504154 (25 bp)
ATATATGGGTCCGTGCAGCATTTCC
LOC_Os12g34010
OsAffx.32248.1.S1_x_at--815--7333Chr12:20504142..20504166 (25 bp)
GTGCAGCATTTCCACGATATCGTTA
LOC_Os12g34010
Target Sequence 
GATACAGTAGCGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTTTAGAGAAAGAGGGAGATGGACCTGCCCC
AGCCAATGGGAATGACGCAGGGAGCCCAGGCCCAGCGGGGAGTGAAAGGCTCTCCTCGTCGGGCTCATCGGTAAACCAAC
CTGAGCCGTTGACACAGGATTTATTGGCTGATGCTGTGACCTATGAGAGCCCAAATTATTTATCAGATGCGGAAAGCACA
AATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGG
CAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGACGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTC
TATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32248.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis