Browse Element(s) Details


OsAffx.3329.1.S1_at

Description tigr:9631.m02541
TID=OsAffx.3329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2591011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25890NANA3+14785418..14789460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25900NANA3+14799965..14800786retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g25910OsAffx.3329.1.S1_at11/113+14811018..14811771hypothetical protein
LOC_Os03g25920OsAffx.13037.1.S1_x_at11/113+14815095..14817884Amino acid permease family protein
LOC_Os03g25930Os.50934.1.S1_at10/113+14822585..14826107emp24/gp25L/p24 family protein, expressed
LOC_Os03g25940Os.4789.1.S1_at11/113+14829048..14833256Cys/Met metabolism PLP-dependent enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3329.1.S1_at--189--10291Chr03:14811059..14811083 (25 bp)
TTTGCTGCTTTTCTCTGCTCGATCT
LOC_Os03g25910
OsAffx.3329.1.S1_at--775--9091Chr03:14811074..14811098 (25 bp)
TGCTCGATCTTCCACCAGCACAGTG
LOC_Os03g25910
OsAffx.3329.1.S1_at--520--4071Chr03:14811104..14811128 (25 bp)
CGAGCACGAGACTCCTCCACAAGAT
LOC_Os03g25910
OsAffx.3329.1.S1_at--605--9211Chr03:14811119..14811143 (25 bp)
TCCACAAGATCGAGGGCATGGCCGC
LOC_Os03g25910
OsAffx.3329.1.S1_at--853--8271Chr03:14811133..14811157 (25 bp)
GGCATGGCCGCCACTACGACAGAAA
LOC_Os03g25910
OsAffx.3329.1.S1_at--115--4131Chr03:14811141..14811165 (25 bp)
CGCCACTACGACAGAAACCAACATA
LOC_Os03g25910
OsAffx.3329.1.S1_at--51--8571Chr03:14811171..14811445 (25 bp)
TGGTTAAAAGCCACTTTCTCCACCA
LOC_Os03g25910
OsAffx.3329.1.S1_at--966--3351Chr03:14811441..14811465 (25 bp)
CACCACCGTCACTGGATTTGGAGGA
LOC_Os03g25910
OsAffx.3329.1.S1_at--1145--1971Chr03:14811515..14811539 (25 bp)
ACTGCTGTCGGCTGGCAGATCTGGA
LOC_Os03g25910
OsAffx.3329.1.S1_at--316--5791Chr03:14811556..14811580 (25 bp)
GACGAATGCAGAGAGAGGGCCACCT
LOC_Os03g25910
OsAffx.3329.1.S1_at--575--4491Chr03:14811698..14811722 (25 bp)
GCCGTGGACACCTTGCCAGAAGAGA
LOC_Os03g25910
Target Sequence 
TTTGCTGCTTTTCTCTGCTCGATCTTCCACCAGCACAGTGGCCGGCGAGCACGAGACTCCTCCACAAGATCGAGGGCATG
GCCGCCACTACGACAGAAACCAACATAGGTACTGGTTAAAAGCCACTTTCTCCACCACCGTCACTGGATTTGGAGGAGAA
GGGGGGAGGCGGATGCAGAAGAAGGGCCACCTCCACCACCATCGCCACTGCTGTCGGCTGGCAGATCTGGAGGAGGAGAA
GGGGGAAGACGAATGCAGAGAGAGGGCCACCTCCACCACCACCACTGTTGCCGCCACCACCCTTGGCCACCGCCAATGTC
CTTGGCCACCACCACCACGTGGAGGACTCCTCGTCCCACCCGCCGCTGCTATCCTTGCCCTTGGCCACCGCCGTGGACAC
CTTGCCAGAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis