Browse Element(s) Details


OsAffx.3368.1.S1_at

Description tigr:9631.m02949
TID=OsAffx.3368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3015010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30120OsAffx.13118.1.S1_at11/113+17152366..17153256expressed protein
LOC_Os03g30130Os.52108.1.S1_at11/113+17162224..17165521MAP3K-like protein kinase, putative, expressed
LOC_Os03g30150OsAffx.3368.1.S1_at10/113+17168457..17170611hypothetical protein
LOC_Os03g30160NANA3+17171270..17172471Kelch motif family protein
LOC_Os03g30170NANA3+17174322..17176996retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30180OsAffx.22722.1.S1_x_at1/113+17177489..17179797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30190OsAffx.10496.1.S1_at1/113+17180303..17183412retrotransposon protein, putative, unclassified
LOC_Os03g30200Os.7354.1.S1_at11/113+17191511..17196010Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3368.1.S1_at--975--2091Chr03:17169935..17169959 (25 bp)
ACATGTGTCAGTCCCATAATATATT
LOC_Os03g30150
OsAffx.3368.1.S1_at--1043--7431Chr03:17169932..17169955 (24 bp)
GTGTCAGTCCCATAATATATTTTCC
LOC_Os03g30150
OsAffx.3368.1.S1_at--393--7231NONE
GTCCCATAATATATTTTCCACTTCC
NONE
OsAffx.3368.1.S1_at--731--1491Chr03:17168576..17168600 (25 bp)
AGCACAATCTCCGTCGGCCAGGACG
LOC_Os03g30150
OsAffx.3368.1.S1_at--922--8431Chr03:17168561..17168585 (25 bp)
GGCCAGGACGCGTACAGCGCTATCG
LOC_Os03g30150
OsAffx.3368.1.S1_at--281--971Chr03:17168557..17168581 (25 bp)
AGGACGCGTACAGCGCTATCGCCTT
LOC_Os03g30150
OsAffx.3368.1.S1_at--447--1651Chr03:17168546..17168570 (25 bp)
AGCGCTATCGCCTTCTCCGTTGCGG
LOC_Os03g30150
OsAffx.3368.1.S1_at--282--371Chr03:17168513..17168537 (25 bp)
ATCACCGTTACCGTCAATGTCCATG
LOC_Os03g30150
OsAffx.3368.1.S1_at--420--1791Chr03:17168510..17168534 (25 bp)
ACCGTTACCGTCAATGTCCATGGGA
LOC_Os03g30150
OsAffx.3368.1.S1_at--678--6751Chr03:17168507..17168531 (25 bp)
GTTACCGTCAATGTCCATGGGAGCG
LOC_Os03g30150
OsAffx.3368.1.S1_at--226--4031Chr03:17168502..17168526 (25 bp)
CGTCAATGTCCATGGGAGCGCGAGT
LOC_Os03g30150
Target Sequence 
ACATGTGTCAGTCCCATAATATATTTTCCACTTCCATCAGCACAATCTCCGTCGGCCAGGACGCGTACAGCGCTATCGCC
TTCTCCGTTGCGGCCGCACCCATCACCGTTACCGTCAATGTCCATGGGAGCGCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis