Browse Element(s) Details


OsAffx.3505.1.S1_at

Description tigr:9631.m04233
TID=OsAffx.3505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4387011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43850Os.24948.1.A1_at9/113+24545620..24550666DNA repair protein recA, chloroplast precursor, putative, expressed
LOC_Os03g43860Os.8342.1.S1_at11/113+24550991..24554575SNF7 family protein, expressed
LOC_Os03g43870OsAffx.3505.1.S1_at11/113+24563639..24564169hypothetical protein
LOC_Os03g43880OsAffx.25525.1.S1_at11/113+24570524..24572122Patatin-like phospholipase family protein, expressed
LOC_Os03g43890Os.37345.1.S1_s_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43890Os.37345.1.S1_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43900OsAffx.3506.1.S1_at11/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_x_at10/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_at8/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.27446.3.S1_x_at1/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3505.1.S1_at--370--871Chr03:24564030..24564054 (25 bp)
ATGGCGGCAGATACGATGACCACGA
LOC_Os03g43870
OsAffx.3505.1.S1_at--250--8931Chr03:24564014..24564038 (25 bp)
TGACCACGACGAGGGCAACTACAGA
LOC_Os03g43870
OsAffx.3505.1.S1_at--958--1351Chr03:24563992..24564016 (25 bp)
AGAGACCCTAACGATGACTGCGAGT
LOC_Os03g43870
OsAffx.3505.1.S1_at--354--8951Chr03:24563978..24564002 (25 bp)
TGACTGCGAGTACGGTGACCACGAT
LOC_Os03g43870
OsAffx.3505.1.S1_at--603--2131Chr03:24563949..24563973 (25 bp)
ACAGAGGCTTCAGGGCACGCGGATT
LOC_Os03g43870
OsAffx.3505.1.S1_at--594--7931Chr03:24563929..24563953 (25 bp)
GGATTCACTAGTGCCAGTCTCAGGA
LOC_Os03g43870
OsAffx.3505.1.S1_at--77--3451Chr03:24563915..24563939 (25 bp)
CAGTCTCAGGAGCAACGTCATTGAA
LOC_Os03g43870
OsAffx.3505.1.S1_at--831--1291Chr03:24563861..24563885 (25 bp)
AGATCCACCATTGCTGTTGAAGAGG
LOC_Os03g43870
OsAffx.3505.1.S1_at--821--8291Chr03:24563816..24563840 (25 bp)
GGCTTCTAGAGCGATCTCGACGATA
LOC_Os03g43870
OsAffx.3505.1.S1_at--753--8111Chr03:24563693..24563716 (24 bp)
GGACGGGCGACAGAATGCACCCTAT
LOC_Os03g43870
OsAffx.3505.1.S1_at--499--5091Chr03:24563677..24563701 (25 bp)
GCACCCTATGCGGAAATTTCGTTTT
LOC_Os03g43870
Target Sequence 
ATGGCGGCAGATACGATGACCACGACGAGGGCAACTACAGAGACCCTAACGATGACTGCGAGTACGGTGACCACGATGAT
GACAGAGGCTTCAGGGCACGCGGATTCACTAGTGCCAGTCTCAGGAGCAACGTCATTGAAGGGGAGGTGAGGAGCATCCT
GGGAGGGGCAGATCCACCATTGCTGTTGAAGAGGTGGCGAGGAGCGATGGCGGCGGCTTCTAGAGCGATCTCGACGATAA
TGGGAGCAGACAACGACGTGGGAATGGGAGCTAGGGACGGGCGACAGAATGCACCCTATGCGGAAATTTCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis