Browse Element(s) Details


OsAffx.3558.1.S1_at

Description tigr:9631.m04861
TID=OsAffx.3558.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g498207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49800Os.22464.1.S1_at11/113+28307285..28311784Phosphatidylinositol-4-phosphate 5-kinase 1, putative, expressed
LOC_Os03g49810OsAffx.13426.1.S1_at9/113+28313027..28314013hypothetical protein
LOC_Os03g49820OsAffx.3558.1.S1_at7/113+28321020..28324333hypothetical protein
LOC_Os03g49830OsAffx.25650.1.S1_at11/113+28339651..28340925expressed protein
LOC_Os03g49830OsAffx.25650.1.S1_x_at11/113+28339651..28340925expressed protein
LOC_Os03g49840OsAffx.25651.1.S1_at11/113+28348659..28349401hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3558.1.S1_at--115--9371Chr03:28322298..28322322 (25 bp)
TCGACAGCGTGGACAAAGCGGGCGT
LOC_Os03g49820
OsAffx.3558.1.S1_at--796--3991Chr03:28322320..28322344 (25 bp)
CGTGGAGATTGCTCGACAGCTCGTC
LOC_Os03g49820
OsAffx.3558.1.S1_at--819--1251Chr03:28322325..28322349 (25 bp)
AGATTGCTCGACAGCTCGTCCAACA
LOC_Os03g49820
OsAffx.3558.1.S1_at--870--5631Chr03:28322334..28322358 (25 bp)
GACAGCTCGTCCAACACATCCTTGG
LOC_Os03g49820
OsAffx.3558.1.S1_at--538--1071Chr03:28322389..28322413 (25 bp)
AGGGCGCCAAGAGCAAATGCGGCAT
LOC_Os03g49820
OsAffx.3558.1.S1_at--1087--8412Chr06:13096651..13096671 (21 bp)
GGCCGAGAGCATCGCGTCAGAGCGC
NONE
OsAffx.3558.1.S1_at--458--2612Chr06:13096844..13096868 (25 bp)
AACGCCTCGGGCTCGCAGTCGTGGA
NONE
OsAffx.3558.1.S1_at--659--4531Chr06:13097032..13097056 (25 bp)
GCCCGCCTCTTGGTGAAGGTGACGT
NONE
OsAffx.3558.1.S1_at--843--8591Chr06:13097042..13097066 (25 bp)
TGGTGAAGGTGACGTGCCGCCGGGC
NONE
OsAffx.3558.1.S1_at--243--8291Chr06:13097064..13097088 (25 bp)
GGCTTGTCCTCGATGCGGCGGATCC
NONE
OsAffx.3558.1.S1_at--703--4051Chr06:13097074..13097098 (25 bp)
CGATGCGGCGGATCCCGATCGCCTG
NONE
Target Sequence 
TCGACAGCGTGGACAAAGCGGGCGTGGAGATTGCTCGACAGCTCGTCCAACACATCCTTGGGGGGTGGGGTGGGGGGAGG
CATGCTGCGGCAGGGCGCCAAGAGCAAATGCGGCATGAAGCGAGAGGAGGCGAGGCTGCCGCCGTGGAAGCGTGTCGCTG
CGCGGCCGAGAGCATCGCGTCAGAGCGCGNGGCGGCGCACGACGGCGNCCCTGANCCTCCCNAGCGCCCTGNCGAACTCC
GGCAGCTCCGCCTCCCCGAGCGCCTCGACGTTGGTGGCCTCCCACCACCANNNGAACCGCCTCCCCGCGACGTCGCGCAG
CCGCGCCACCTCCACCTTGGCCTCGTCCGCCGCCCGCCTCAACGCCTCGGGCTCGCAGTCGTGGACNNCGGGGNCGGGCG
CNTAGCAGCGGCNGNGNNGNNNGNNNNCNNCGANGNNNNNNNNAACAGCCCGGCCCGCCTCTTGGTGAAGGTGACGTGCC
GCCGGGCTTGTCCTCGATGCGGCGGATCCCGATCGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis