Browse Element(s) Details


OsAffx.3741.1.S1_at

Description tigr:9632.m00673
TID=OsAffx.3741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0761010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07570Os.45173.1.S1_x_at2/114+4010900..4012827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07580NANA4+4014850..4021149retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g07590NANA4+4024598..4026073retrotransposon protein, putative, LINE subclass
LOC_Os04g07600OsAffx.25910.1.S1_at11/114+4027000..4029249Homeobox associated leucine zipper family protein
LOC_Os04g07610OsAffx.3741.1.S1_at10/114+4035647..4036159hypothetical protein
LOC_Os04g07620OsAffx.13713.1.S1_at11/114+4042113..4042421hypothetical protein
LOC_Os04g07630OsAffx.13714.1.S1_x_at11/114+4044475..4044681hypothetical protein
LOC_Os04g07640Os.45173.1.S1_x_at3/114+4046923..4048852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07650NANA4+4051010..4057750retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07660NANA4+4059944..4066115retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3741.1.S1_at--562--10071Chr04:4035682..4035706 (25 bp)
TAGTGCGCCGTCCAATCGGCCCTTA
LOC_Os04g07610
OsAffx.3741.1.S1_at--637--3051Chr04:4035695..4035719 (25 bp)
AATCGGCCCTTATGGCAGATCTGGG
LOC_Os04g07610
OsAffx.3741.1.S1_at--20--4511Chr04:4035700..4035724 (25 bp)
GCCCTTATGGCAGATCTGGGCCGTC
LOC_Os04g07610
OsAffx.3741.1.S1_at--643--1811Chr04:4035749..4035770 (22 bp)
ACCCACGTGGTCCAGGTCCATGAAT
LOC_Os04g07610
OsAffx.3741.1.S1_at--374--1911Chr04:4035753..4036074 (25 bp)
ACGTGGTCCAGGTCCATGAATCCAG
LOC_Os04g07610
OsAffx.3741.1.S1_at--171--7271NONE
GTCCAGGTCCATGAATCCAGCAGTT
NONE
OsAffx.3741.1.S1_at--354--1031Chr04:4035762..4036083 (25 bp)
AGGTCCATGAATCCAGCAGTTCCGA
LOC_Os04g07610
OsAffx.3741.1.S1_at--982--3511Chr04:4036067..4036088 (22 bp)
CATGAATCCAGCAGTTCCGACGCTC
LOC_Os04g07610
OsAffx.3741.1.S1_at--118--5811Chr04:4036082..4036106 (25 bp)
GACGCTCCCGTTTACTACAAAGTGG
LOC_Os04g07610
OsAffx.3741.1.S1_at--401--4771Chr04:4036085..4036109 (25 bp)
GCTCCCGTTTACTACAAAGTGGTTG
LOC_Os04g07610
OsAffx.3741.1.S1_at--47--3291Chr04:4036099..4036123 (25 bp)
CAAAGTGGTTGCAGAAGTTCCTCCA
LOC_Os04g07610
Target Sequence 
TAGTGCGCCGTCCAATCGGCCCTTATGGCAGATCTGGGCCGTCGGTTTTGTGGACCGGCGGTGGACCACCCACGTGGTCC
AGGTCCATGAATCCAGCAGTTCCGACGCTCCCGTTTACTACAAAGTGGTTGCAGAAGTTCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis