Browse Element(s) Details


OsAffx.3756.1.S1_at

Description tigr:9632.m00847
TID=OsAffx.3756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0977011/11Ser/Thr protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09720OsAffx.13735.1.S1_at11/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09720Os.5061.1.S1_s_at10/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09730OsAffx.13736.1.S1_at11/114+5202262..5202486hypothetical protein
LOC_Os04g09740NANA4+5204532..5205224transposon protein, putative, Pong sub-class, expressed
LOC_Os04g09750NANA4+5207079..5208881hypothetical protein
LOC_Os04g09760Os.46012.2.S1_x_at10/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.46012.3.S1_x_at6/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.27088.1.A1_x_at5/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.54691.1.S1_x_at1/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09770OsAffx.3756.1.S1_at11/114+5221481..5223329Ser/Thr protein kinase, putative
LOC_Os04g09780OsAffx.13738.1.S1_at11/114+5226855..5227870hypothetical protein
LOC_Os04g09790NANA4+5232252..5232725hypothetical protein
LOC_Os04g09800Os.54132.1.S1_at4/114+5234750..5240543SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
LOC_Os04g09800OsAffx.18075.1.S1_x_at1/114+5234750..5240543SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
LOC_Os04g09810Os.49733.1.S1_at11/114+5243678..5246761riboflavin biosynthesis protein RibD containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3756.1.S1_at--430--8291Chr04:5222008..5222032 (25 bp)
GGCTTGGAGTATTTGCACCGAGGTT
LOC_Os04g09770
OsAffx.3756.1.S1_at--366--2371Chr04:5221954..5221978 (25 bp)
AAACCTCACAATATCCTACTTGACC
LOC_Os04g09770
OsAffx.3756.1.S1_at--368--3731Chr04:5221939..5221963 (25 bp)
CTACTTGACCATGATTTTGTCCCAA
LOC_Os04g09770
OsAffx.3756.1.S1_at--856--8271Chr04:5221895..5221919 (25 bp)
GGCTAAGTTATGCAATCCGAAGGAA
LOC_Os04g09770
OsAffx.3756.1.S1_at--11--2951Chr04:5221859..5221883 (25 bp)
AATGGCCGGTATGCGAGGAACAATT
LOC_Os04g09770
OsAffx.3756.1.S1_at--411--5171Chr04:5221717..5221741 (25 bp)
GCAAGCGTTGATAACCCAAGCGAGA
LOC_Os04g09770
OsAffx.3756.1.S1_at--715--4611Chr04:5221698..5221722 (25 bp)
GCGAGATGTATTTTCCGGACTGGAT
LOC_Os04g09770
OsAffx.3756.1.S1_at--801--4911Chr04:5221647..5221671 (25 bp)
GCTTGCACTCGTTTGACATGGAACA
LOC_Os04g09770
OsAffx.3756.1.S1_at--975--2951Chr04:5221598..5221622 (25 bp)
AATGGCCTCAATTGGCCTGTGGTGC
LOC_Os04g09770
OsAffx.3756.1.S1_at--771--9051Chr04:5221576..5221600 (25 bp)
TGCATACAAGTATCACCTAGCTCTC
LOC_Os04g09770
OsAffx.3756.1.S1_at--653--9491Chr04:5221555..5221579 (25 bp)
TCTCGCCCTACGATGAGCAAGGTTT
LOC_Os04g09770
Target Sequence 
GGCTTGGAGTATTTGCACCGAGGTTGTAATACACGCATCATACACTTTGACATCAAACCTCACAATATCCTACTTGACCA
TGATTTTGTCCCAAAAATTGCCGACTTTGGCTTGGCTAAGTTATGCAATCCGAAGGAAAGCTACCTTTCAATGGCCGGTA
TGCGAGGAACAATTGGGTTTATTGCACCAGAAGTATTTTCAAGAAGATTTGGAGTTGTTTCAACTAAGTCAGATGTCTAT
AGCTATGGAATGATGCTTCTTGAGATGGTCGGGGGAAGGAAGAACTTGAAAGCAAGCGTTGATAACCCAAGCGAGATGTA
TTTTCCGGACTGGATTTATAGGTGTTTGGCAGATGTTGGAAGCTTGCACTCGTTTGACATGGAACATGAAACTGAGGAGA
TTGCAAGAAAAATGGCCTCAATTGGCCTGTGGTGCATACAAGTATCACCTAGCTCTCGCCCTACGATGAGCAAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis