Browse Element(s) Details


OsAffx.3852.1.S1_at

Description tigr:9632.m02033
TID=OsAffx.3852.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2205011/11Zinc knuckle family protein
LOC_Os05g481702/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22010NANA4+12435336..12442006retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22020NANA4+12447071..12449557retrotransposon protein, putative, unclassified
LOC_Os04g22030Os.52609.1.S1_at1/114+12449876..12456232retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22040NANA4+12457320..12457583hypothetical protein
LOC_Os04g22050OsAffx.3852.1.S1_at11/114+12459678..12461276Zinc knuckle family protein
LOC_Os04g22050Os.53180.1.S1_at1/114+12459678..12461276Zinc knuckle family protein
LOC_Os04g22060NANA4+12462724..12469869retrotransposon protein, putative, unclassified, expressed
LOC_Os04g22070OsAffx.26092.1.S1_at10/114+12470755..12472510hypothetical protein
LOC_Os04g22080OsAffx.31869.4.S1_x_at1/114+12476271..12480195retrotransposon protein, putative, unclassified
LOC_Os04g22080OsAffx.31869.5.S1_x_at1/114+12476271..12480195retrotransposon protein, putative, unclassified
LOC_Os04g22090OsAffx.13916.1.S1_at11/114+12482724..12488200NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3852.1.S1_at--705--2831Chr04:12460187..12460211 (25 bp)
AAGTCAGGTTCGTCCCAAGCGGCAA
LOC_Os04g22050
OsAffx.3852.1.S1_at--549--4691Chr04:12460169..12460193 (25 bp)
GCGGCAAACCGCAATGTGTCCAAGG
LOC_Os04g22050
OsAffx.3852.1.S1_at--335--1391Chr04:12460075..12460099 (25 bp)
AGAAACTGGCTCAGGCAAACCTTCT
LOC_Os04g22050
OsAffx.3852.1.S1_at--558--8091Chr04:12460017..12460041 (25 bp)
GGAGCCGACACTGCTGATGGCGCAA
LOC_Os04g22050
OsAffx.3852.1.S1_at--294--9951Chr04:12459972..12459996 (25 bp)
TACCGATCCTGTCATTACTGACGGG
LOC_Os04g22050
OsAffx.3852.1.S1_at--600--9091Chr04:12459924..12459948 (25 bp)
TGCTCACGTTTCTCTTCAGGATGAA
LOC_Os04g22050
OsAffx.3852.1.S1_at--777--5551Chr04:12459898..12459922 (25 bp)
GAAAGCCCGTTGATCTAGACTGGAT
LOC_Os04g22050
OsAffx.3852.1.S1_at--553--5632Chr05:27526774..27526798 (25 bp)
GACACGGGCGCTTCAAATCACATGA
LOC_Os05g48170
OsAffx.3852.1.S1_at--586--7571Chr04:12459843..12459867 (25 bp)
GGGCTACCGTGATGTGTTCTCCGAG
LOC_Os04g22050
OsAffx.3852.1.S1_at--70--9152Chr05:27526838..27526862 (25 bp)
TGCGCGGCACTGTCAAGTTTGGTGA
LOC_Os05g48170
OsAffx.3852.1.S1_at--1152--6191Chr04:12459754..12459778 (25 bp)
GAGGCATGGTGCTGTTCGCTTGCAA
LOC_Os04g22050
Target Sequence 
AAGTCAGGTTCGTCCCAAGCGGCAAACCGCAATGTGTCCAAGGACAAATGCCGGTACTGTGGCAAACTTGGTCACTGGGC
CAAGGACTGTTGCAAGGCGAAGCGAGACCGCGAGAAACTGGCTCAGGCAAACCTTCTCATCACCGAGCCTGCTCAAGCCG
CGGACGAAGGGGAGCCGACACTGCTGATGGCGCAAGTGTGCGAGCTTGCCCCTGCTACCGATCCTGTCATTACTGACGGG
GAGGTGACACTGAAGGAGGAACGTGCTCACGTTTCTCTTCAGGATGAAGGAAAGCCCGTTGATCTAGACTGGATCCTTGA
CACGGGCGCTTCAAATCACATGACGGGCTACCGTGATGTGTTCTCCGAGCTTCACACCACCGTGCGCGGCACTGTCAAGT
TTGGTGATGCGTCGAGAGTCTGGATTGAAGGACGAGGCATGGTGCTGTTCGCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis