Browse Element(s) Details


OsAffx.26092.1.S1_at

Description tigr:9632.m02035
TID=OsAffx.26092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2207010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22020NANA4+12447071..12449557retrotransposon protein, putative, unclassified
LOC_Os04g22030Os.52609.1.S1_at1/114+12449876..12456232retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22040NANA4+12457320..12457583hypothetical protein
LOC_Os04g22050OsAffx.3852.1.S1_at11/114+12459678..12461276Zinc knuckle family protein
LOC_Os04g22050Os.53180.1.S1_at1/114+12459678..12461276Zinc knuckle family protein
LOC_Os04g22060NANA4+12462724..12469869retrotransposon protein, putative, unclassified, expressed
LOC_Os04g22070OsAffx.26092.1.S1_at10/114+12470755..12472510hypothetical protein
LOC_Os04g22080OsAffx.31869.4.S1_x_at1/114+12476271..12480195retrotransposon protein, putative, unclassified
LOC_Os04g22080OsAffx.31869.5.S1_x_at1/114+12476271..12480195retrotransposon protein, putative, unclassified
LOC_Os04g22090OsAffx.13916.1.S1_at11/114+12482724..12488200NB-ARC domain containing protein, expressed
LOC_Os04g22100OsAffx.3853.1.S1_at11/114+12493787..12496380BED zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26092.1.S1_at--73--3311Chr04:12472442..12472466 (25 bp)
CACACCGCGGTCACCAGGTGGTAGA
LOC_Os04g22070
OsAffx.26092.1.S1_at--341--971Chr04:12472404..12472427 (24 bp)
AGGAGCCCAGGCGTCATCGTCGTGT
LOC_Os04g22070
OsAffx.26092.1.S1_at--148--491NONE
ATCGTCGTGTCCTCTTAACTTGGCC
NONE
OsAffx.26092.1.S1_at--263--6371Chr04:12471555..12471579 (25 bp)
GATCCATTTTCGCTAACAGTGCTAG
LOC_Os04g22070
OsAffx.26092.1.S1_at--327--8611Chr04:12471453..12471477 (25 bp)
TGGTGCCAATGGACGGCCTATGGTC
LOC_Os04g22070
OsAffx.26092.1.S1_at--306--3931Chr04:12471440..12471464 (25 bp)
CGGCCTATGGTCTACGGTTGATGAT
LOC_Os04g22070
OsAffx.26092.1.S1_at--506--6211Chr04:12471418..12471442 (25 bp)
GATGGCGTCGACTGAAATTTCGGAG
LOC_Os04g22070
OsAffx.26092.1.S1_at--284--3131Chr04:12471403..12471427 (25 bp)
AATTTCGGAGGTAGCAGCCTATGCT
LOC_Os04g22070
OsAffx.26092.1.S1_at--814--1671Chr04:12471388..12471412 (25 bp)
AGCCTATGCTCTCCAGATGATGGCA
LOC_Os04g22070
OsAffx.26092.1.S1_at--1022--2151Chr04:12471362..12471386 (25 bp)
ACAGCGAGAGACAGCACCAGATGGT
LOC_Os04g22070
OsAffx.26092.1.S1_at--205--6091Chr04:12470785..12470809 (25 bp)
GAGTAGACTGATACTCACCAACGAT
LOC_Os04g22070
Target Sequence 
CACACCGCGGTCACCAGGTGGTAGAGGGGAGGGGATTGGAGGAGCCCAGGCGTCATCGTCGTGTCCTCTTAACTTGGCCG
CCAACGAAGATCCATTTTCGCTAACAGTGCTAGGTGAGGAAGAAAAAGCTGAGAATGGAATATGGCTGCAGAGGCAGTGG
TGCAACGATGGGTGGTCAACGACAAGGAGGTGGTGCCAATGGACGGCCTATGGTCTACGGTTGATGATGGCGTCGACTGA
AATTTCGGAGGTAGCAGCCTATGCTCTCCAGATGATGGCAAACAGCGAGAGACAGCACCAGATGGTGGAGGTGAAGCCGG
AGGGTTGGAAGATGGTAGAGAAGAAGGAAGATGGGAGTAGACTGATACTCACCAACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis