Browse Element(s) Details


OsAffx.3853.1.S1_at

Description tigr:9632.m02038
TID=OsAffx.3853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BED zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2210011/11BED zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22060NANA4+12462724..12469869retrotransposon protein, putative, unclassified, expressed
LOC_Os04g22070OsAffx.26092.1.S1_at10/114+12470755..12472510hypothetical protein
LOC_Os04g22080OsAffx.31869.4.S1_x_at1/114+12476271..12480195retrotransposon protein, putative, unclassified
LOC_Os04g22080OsAffx.31869.5.S1_x_at1/114+12476271..12480195retrotransposon protein, putative, unclassified
LOC_Os04g22090OsAffx.13916.1.S1_at11/114+12482724..12488200NB-ARC domain containing protein, expressed
LOC_Os04g22100OsAffx.3853.1.S1_at11/114+12493787..12496380BED zinc finger family protein, expressed
LOC_Os04g22110Os.47999.3.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22110OsAffx.8338.1.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22120Os.51339.1.S1_at11/114+12509573..12514925Protein kinase domain containing protein, expressed
LOC_Os04g22130OsAffx.3854.1.S1_at11/114+12521196..12521447hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3853.1.S1_at--351--4291Chr04:12496325..12496349 (25 bp)
CCTCGATTGGATGGCTGGCGGATAC
LOC_Os04g22100
OsAffx.3853.1.S1_at--890--2591Chr04:12496281..12496305 (25 bp)
AACGACAAGTTTGGCGCGTGGATTA
LOC_Os04g22100
OsAffx.3853.1.S1_at--1013--5511Chr04:12496230..12496254 (25 bp)
GAAAAGCTCCGGTCTGAGGTCGAGA
LOC_Os04g22100
OsAffx.3853.1.S1_at--1044--4231Chr04:12496147..12496171 (25 bp)
CCGATCACTCGGTCGTCTAAGGGAG
LOC_Os04g22100
OsAffx.3853.1.S1_at--455--9531Chr04:12496132..12496156 (25 bp)
TCTAAGGGAGGTGCTGTACGACGCC
LOC_Os04g22100
OsAffx.3853.1.S1_at--557--4791Chr04:12496090..12496114 (25 bp)
GCTCGAATACTACAGGCTCCAGCAT
LOC_Os04g22100
OsAffx.3853.1.S1_at--834--5991Chr04:12494024..12494048 (25 bp)
GAGACCGAGTTGCAACGCTGGCATA
LOC_Os04g22100
OsAffx.3853.1.S1_at--579--9191Chr04:12493972..12493996 (25 bp)
TCCAAGGCTTGGGAGGACTTCGATA
LOC_Os04g22100
OsAffx.3853.1.S1_at--441--5291Chr04:12493919..12493943 (25 bp)
GAAGGCCAGATGTATCCACTGTCAC
LOC_Os04g22100
OsAffx.3853.1.S1_at--1073--7611Chr04:12493867..12493891 (25 bp)
GGGACGTCAGTTTTACACAACCATC
LOC_Os04g22100
OsAffx.3853.1.S1_at--677--2571Chr04:12493818..12493842 (25 bp)
AACGTGAAGCAATTGGTCCGCCACC
LOC_Os04g22100
Target Sequence 
CCTCGATTGGATGGCTGGCGGATACCATAGTGGAGAACCTGGACAACGACAAGTTTGGCGCGTGGATTAGCCAGGTCGGG
CTCGCCGATGACACCGAAAAGCTCCGGTCTGAGGTCGAGAGGGTGGAGGTGGTGGTCGGTGCTGTCAAGGGGAGGGCGAT
CGCGAACAAACCGCTGGCCCGATCACTCGGTCGTCTAAGGGAGGTGCTGTACGACGCCGACGACGCGGTCGACGAGCTCG
AATACTACAGGCTCCAGCATCAGCTCCAAGGAGATTCATGCGCGGATGAACATGGAGTAGAGCAAGCAGCGAGACCGAGT
TGCAACGCTGGCATAGCGAGTAGCAGTGGTGGCAAAAAACGATCCAAGGCTTGGGAGGACTTCGATATCACGGAAAAGGA
AAACGGAAAGGCGGTGAAGGCCAGATGTATCCACTGTCACACGGTGGTCAAGTGCGGTTCCGACAAAGGGACGTCAGTTT
TACACAACCATCTGAAGAGTGACAATTGTAAGAAGAAACGTGAAGCAATTGGTCCGCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis