Browse Element(s) Details


OsAffx.3854.1.S1_at

Description tigr:9632.m02041
TID=OsAffx.3854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2213011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22100OsAffx.3853.1.S1_at11/114+12493787..12496380BED zinc finger family protein, expressed
LOC_Os04g22110Os.47999.3.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22110OsAffx.8338.1.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22120Os.51339.1.S1_at11/114+12509573..12514925Protein kinase domain containing protein, expressed
LOC_Os04g22130OsAffx.3854.1.S1_at11/114+12521196..12521447hypothetical protein
LOC_Os04g22140OsAffx.13917.1.S1_x_at11/114+12521672..12522585hypothetical protein
LOC_Os04g22140OsAffx.13917.1.S1_at11/114+12521672..12522585hypothetical protein
LOC_Os04g22140OsAffx.29544.1.S1_x_at1/114+12521672..12522585hypothetical protein
LOC_Os04g22150OsAffx.13918.1.S1_at11/114+12524867..12525867hypothetical protein
LOC_Os04g22160Os.26886.1.S1_x_at8/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22160Os.26886.3.S1_x_at5/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22160OsAffx.16244.1.S1_x_at1/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22170NANA4+12534618..12535520transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22180Os.26886.6.S1_s_at9/114+12535770..12537516hypothetical protein
LOC_Os04g22180Os.26886.2.S1_s_at8/114+12535770..12537516hypothetical protein
LOC_Os04g22180OsAffx.16467.1.S1_at3/114+12535770..12537516hypothetical protein
LOC_Os04g22180OsAffx.3425.1.S1_at1/114+12535770..12537516hypothetical protein
LOC_Os04g22190Os.31845.1.S1_x_at1/114+12545306..12548516hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3854.1.S1_at--1084--1412Chr10:20737719..20737743 (25 bp)
AGAAAACACTAAGCTCGAACTAGAG
NONE
OsAffx.3854.1.S1_at--962--10031Chr04:12521353..12521377 (25 bp)
TAGAGCAAATGCTGGGTGTCCTCGG
LOC_Os04g22130
OsAffx.3854.1.S1_at--943--7612Chr10:20737677..20737699 (23 bp)
GGGAGCCTTTATTTCTGGCTTTCGT
NONE
OsAffx.3854.1.S1_at--350--4451Chr04:12521325..12521349 (25 bp)
GCCTTTATTTCTGGCTTTCGTCGAT
LOC_Os04g22130
OsAffx.3854.1.S1_at--522--8491Chr04:12521314..12521338 (25 bp)
TGGCTTTCGTCGATCCAGCAGTGAT
LOC_Os04g22130
OsAffx.3854.1.S1_at--657--10611Chr04:12521309..12521333 (25 bp)
TTCGTCGATCCAGCAGTGATCATAC
LOC_Os04g22130
OsAffx.3854.1.S1_at--1024--551Chr04:12521302..12521326 (25 bp)
ATCCAGCAGTGATCATACAAGATGA
LOC_Os04g22130
OsAffx.3854.1.S1_at--250--9591Chr04:12521271..12521295 (25 bp)
TCTTGTTCAGAACCAAATCCGCATT
LOC_Os04g22130
OsAffx.3854.1.S1_at--287--1711Chr04:12521260..12521284 (25 bp)
ACCAAATCCGCATTCTTGAAAACAG
LOC_Os04g22130
OsAffx.3854.1.S1_at--498--3612Chr02:15474425..15474483 (25 bp)
CTTGAAAACAGGAAGAAGGCGCTGC
NONE
OsAffx.3854.1.S1_at--188--2951Chr04:12521231..12521255 (25 bp)
AAGGCGCTGCTGGAAGAACAGCAAT
LOC_Os04g22130
Target Sequence 
AGAAAACACTAAGCTCGAACTAGAGCAAATGCTGGGTGTCCTCGGGGAGCCTTTATTTCTGGCTTTCGTCGATCCAGCAG
TGATCATACAAGATGATATAGTTCTTGTTCAGAACCAAATCCGCATTCTTGAAAACAGGAAGAAGGCGCTGCTGGAAGAA
CAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis