Browse Element(s) Details


OsAffx.3867.1.S1_at

Description tigr:9632.m02155
TID=OsAffx.3867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2323010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23220OsAffx.26113.1.S1_at11/114+13195559..13200242expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_x_at11/114+13195559..13200242expressed protein
LOC_Os04g23230OsAffx.3867.1.S1_at10/114+13220820..13221702hypothetical protein
LOC_Os04g23240NANA4+13232880..13237730transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g23250NANA4+13238790..13243432transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3867.1.S1_at--134--10311Chr04:13220858..13220882 (25 bp)
TTTCGTCGTCGCGTGGTACGTGAGA
LOC_Os04g23230
OsAffx.3867.1.S1_at--609--9931Chr04:13220874..13220898 (25 bp)
TACGTGAGAGCGACGAGTGATCGAT
LOC_Os04g23230
OsAffx.3867.1.S1_at--634--511Chr04:13220897..13220921 (25 bp)
ATCGATCCCCGAGAAGATACATATG
LOC_Os04g23230
OsAffx.3867.1.S1_at--807--331NONE
ATACATATGGCGCAGCGGGCATCTC
NONE
OsAffx.3867.1.S1_at--389--5551Chr04:13221557..13221581 (25 bp)
GAAACGCCACGGAGATAGCGGCCAT
LOC_Os04g23230
OsAffx.3867.1.S1_at--179--10011Chr04:13221572..13221596 (25 bp)
TAGCGGCCATGCAATGGCAGGCTTT
LOC_Os04g23230
OsAffx.3867.1.S1_at--422--8271Chr04:13221587..13221611 (25 bp)
GGCAGGCTTTCGATCAGCAATTCTC
LOC_Os04g23230
OsAffx.3867.1.S1_at--457--391Chr04:13221599..13221623 (25 bp)
ATCAGCAATTCTCGCGAGACCCAAG
LOC_Os04g23230
OsAffx.3867.1.S1_at--767--5991Chr04:13221614..13221638 (25 bp)
GAGACCCAAGGCGATGGCATGGCAT
LOC_Os04g23230
OsAffx.3867.1.S1_at--1027--3491Chr04:13221631..13221655 (25 bp)
CATGGCATGCATGGTAGTGTTCATA
LOC_Os04g23230
OsAffx.3867.1.S1_at--652--10071Chr04:13221645..13221669 (25 bp)
TAGTGTTCATATGCGATGCCGTGCT
LOC_Os04g23230
Target Sequence 
TTTCGTCGTCGCGTGGTACGTGAGAGCGACGAGTGATCGATCGATCCCCGAGAAGATACATATGGCGCAGCGGGCATCTC
GGAGGCGAGGGGGAAACGCCACGGAGATAGCGGCCATGCAATGGCAGGCTTTCGATCAGCAATTCTCGCGAGACCCAAGG
CGATGGCATGGCATGCATGGTAGTGTTCATATGCGATGCCGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis