Browse Element(s) Details


OsAffx.4088.1.S1_at

Description tigr:9632.m04293
TID=OsAffx.4088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4469010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44690OsAffx.4088.1.S1_at10/114+26248453..26248979hypothetical protein
LOC_Os04g44700Os.53736.1.S1_at11/114+26256387..26261046WD-40 repeat family protein, putative, expressed
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4088.1.S1_at--471--4851Chr04:26248850..26248874 (25 bp)
GCTACCCACCATTTGCAACGGATAG
LOC_Os04g44690
OsAffx.4088.1.S1_at--797--1811Chr04:26248847..26248871 (25 bp)
ACCCACCATTTGCAACGGATAGAAG
LOC_Os04g44690
OsAffx.4088.1.S1_at--107--3371Chr04:26248844..26248868 (25 bp)
CACCATTTGCAACGGATAGAAGGAA
LOC_Os04g44690
OsAffx.4088.1.S1_at--708--8051Chr04:26248813..26248834 (22 bp)
GGAGAGATGAGACTATCCAAGGCTC
LOC_Os04g44690
OsAffx.4088.1.S1_at--266--6311Chr04:26248542..26248829 (25 bp)
GATGAGACTATCCAAGGCTCTCCGA
LOC_Os04g44690
OsAffx.4088.1.S1_at--505--5991Chr04:26248539..26248826 (25 bp)
GAGACTATCCAAGGCTCTCCGAGGT
LOC_Os04g44690
OsAffx.4088.1.S1_at--356--5691NONE
GACTATCCAAGGCTCTCCGAGGTAT
NONE
OsAffx.4088.1.S1_at--511--10111Chr04:26248534..26248821 (25 bp)
TATCCAAGGCTCTCCGAGGTATGCC
LOC_Os04g44690
OsAffx.4088.1.S1_at--878--9271Chr04:26248490..26248514 (25 bp)
TCGCCGATTTCGTTGTCCCCGAACA
LOC_Os04g44690
OsAffx.4088.1.S1_at--350--4031Chr04:26248486..26248510 (25 bp)
CGATTTCGTTGTCCCCGAACAGGAG
LOC_Os04g44690
OsAffx.4088.1.S1_at--1031--10151Chr04:26248483..26248507 (25 bp)
TTTCGTTGTCCCCGAACAGGAGGCA
LOC_Os04g44690
Target Sequence
GCTACCCACCATTTGCAACGGATAGAAGGAAGAGATAGAGGGAGAGATGAGACTATCCAAGGCTCTCCGAGGTATGCCTG
CTGCCTTCTCAAGACCGTCGCCGATTTCGTTGTCCCCGAACAGGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis