Browse Element(s) Details


Os.49303.1.S1_a_at

Description gb:AK059419.1
DB_XREF= gi:32969437
TID=Os.49303.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D10, full insert sequence.
FL= gb:AK069574.1 gb:AK059419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4471011/11C-terminal domain phosphatase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44690OsAffx.4088.1.S1_at10/114+26248453..26248979hypothetical protein
LOC_Os04g44700Os.53736.1.S1_at11/114+26256387..26261046WD-40 repeat family protein, putative, expressed
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009628biological_processresponse to abiotic stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0019204molecular_functionnucleotide phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49303.1.S1_a_at--608--3891Chr04:26274915..26274939 (25 bp)
CTGTGATTTGCCCTGACTCTGTTAC
LOC_Os04g44710
Os.49303.1.S1_a_at--240--10471Chr04:26274936..26274960 (25 bp)
TTACCCGTGATACCCCAGTGGAGTG
LOC_Os04g44710
Os.49303.1.S1_a_at--952--4911Chr04:26275072..26275096 (25 bp)
GCTTGATTGGACAGTTTTGCTACGT
LOC_Os04g44710
Os.49303.1.S1_a_at--742--7691Chr04:26275119..26275143 (25 bp)
GGGTAATTCCCATGGCTTTGATTCC
LOC_Os04g44710
Os.49303.1.S1_a_at--772--6571Chr04:26275138..26275162 (25 bp)
GATTCCAGTTTTACACTGCTTCCTG
LOC_Os04g44710
Os.49303.1.S1_a_at--690--9851Chr04:26275190..26275214 (25 bp)
TACAGCAACCGGGTTCGGCTGGTGT
LOC_Os04g44710
Os.49303.1.S1_a_at--1146--7271Chr04:26275255..26275279 (25 bp)
GTGCCATACTCCTGCATTGGGTGAT
LOC_Os04g44710
Os.49303.1.S1_a_at--1026--4791Chr04:26275349..26275373 (25 bp)
GCTCGAATCTTGGTGGCTACGTGCA
LOC_Os04g44710
Os.49303.1.S1_a_at--840--2971Chr04:26275375..26275399 (25 bp)
AATGTTGTCCCTCTTTCTGTTTATC
LOC_Os04g44710
Os.49303.1.S1_a_at--317--6051Chr04:26275409..26275433 (25 bp)
GAGATAAGCAGACTTTGGCCTTCTA
LOC_Os04g44710
Os.49303.1.S1_a_at--595--8451Chr04:26275424..26275448 (25 bp)
TGGCCTTCTATTTCCGTGAGGAGAT
LOC_Os04g44710
Target Sequence 
CTGTGATTTGCCCTGACTCTGTTACCCGTGATACCCCAGTGGAGTGTGGATATTAGAAGCATGACAGTTGGTAAAATGGC
TTCCTTGCGTGCAGTAGATTAGCCAATTGTATTGCTCGAATTAATTTGTTTCTTCAGATCTTAGATTTAGGGTGGTAGCT
TGATTGGACAGTTTTGCTACGTAGTGGTAGCTTCAATTCCATGGGGGTAATTCCCATGGCTTTGATTCCAGTTTTACACT
GCTTCCTGCTGCTCTTCATGGCCATGTTTGGTTCATACAGCAACCGGGTTCGGCTGGTGTTGGTCCAAGGCTTAAGGAGG
TTGGCTATGTATACAGATTGGTGCCATACTCCTGCATTGGGTGATGCATGATGCTGAATTGCTGATTGATGCTACAGAGT
ATATACCTGCATTGGTTGAAGATCTTTATGAGAAGCTCGAATCTTGGTGGCTACGTGCACAATGTTGTCCCTCTTTCTGT
TTATCTGNATGCTTGAGATAAGCAGACTTTGGCCTTCTATTTCCGTGAGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49303.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis