Browse Element(s) Details


OsAffx.4090.1.S1_s_at

Description tigr:9632.m04298
TID=OsAffx.4090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lanthionine synthetase C-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4473011/11Lanthionine synthetase C-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44700Os.53736.1.S1_at11/114+26256387..26261046WD-40 repeat family protein, putative, expressed
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4090.1.S1_s_at--823--2311Chr04:26283404..26283428 (25 bp)
AAAGGGAACCTTGCGCTACATGATT
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--78--9611Chr04:26283428..26283452 (25 bp)
TCAGAACCGGTTCCCTAGTGGTAAT
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--921--7491Chr04:26283445..26283469 (25 bp)
GTGGTAATTACCCTGTTACTGAGGA
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--372--711Chr04:26283478..26283502 (25 bp)
ATGATCGATTTGTGCACTGGTGCCA
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--1066--171Chr04:26283516..26283540 (25 bp)
ATTTCCCTCACCTTAGCAAAGGCTT
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--239--2311Chr04:26283533..26283665 (25 bp)
AAAGGCTTCACAGGTGTTCCCAGAA
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--197--7611Chr04:26283756..26283780 (25 bp)
GGGAACGCCTATACATTTCTAGCAC
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--948--10571Chr04:26283772..26283796 (25 bp)
TTCTAGCACTTTTCCGCCTAACGAA
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--949--10691Chr04:26283833..26283857 (25 bp)
TTGCTTTCTCCTTGACCGAGCTAAA
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--44--5131Chr04:26283881..26283905 (25 bp)
GCACAGTGGTGATGAGCCGTATTCC
LOC_Os04g44730
OsAffx.4090.1.S1_s_at--125--5291Chr04:26283925..26283949 (25 bp)
GAATGGCTTACCTGTTTCTGGACAT
LOC_Os04g44730
Target Sequence 
AAAGGGAACCTTGCGCTACATGATTCAGAACCGGTTCCCTAGTGGTAATTACCCTGTTACTGAGGAGGATAAGCATGATC
GATTTGTGCACTGGTGCCATGGGGCTCCTGGCATTTCCCTCACCTTAGCAAAGGCTTCACAGGTGTTCCCAGAAGAACGA
TTCCTTGAGGCAATTGCAGAGGCGGCAGAGGTTGTTTGGAATAGAGGGCTGCTCAAAAGAGTTGGAATATGCCATGGAGT
AAGTGGGAACGCCTATACATTTCTAGCACTTTTCCGCCTAACGAAAAAGAAGGAACACCTCTACCGTGCTAAAGCTTTCG
CTTGCTTTCTCCTTGACCGAGCTAAACAACTGATTGCGGATGGCATCATGCACAGTGGTGATGAGCCGTATTCCTTGTTT
GAAGGACAAGTTGGAATGGCTTACCTGTTTCTGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4090.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis