Browse Element(s) Details


OsAffx.26464.1.S1_s_at

Description tigr:9632.m04301
TID=OsAffx.26464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4476011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26464.1.S1_s_at--301--8491Chr04:26291485..26291509 (25 bp)
TGGCTCCTGCCATGATTCCAAGCTT
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--1013--3231Chr04:26291453..26291477 (25 bp)
CAAGCTTCAGCAGTTCCTCTTAAAA
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--739--2351Chr04:26291426..26291450 (25 bp)
AAAGCTTTGCGTGATCGAGTTAAAC
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--1020--9611Chr04:26291394..26291418 (25 bp)
TCATGCGAAACTTGTGGCGACGCGA
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--857--5631Chr04:26291368..26291392 (25 bp)
GACACGAACTTCCAGATGGGCCAAA
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--139--2431Chr04:26291344..26291368 (25 bp)
AAAACTTGCCAGTTGGTTGCCTGGT
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--440--7911Chr04:26291330..26291354 (25 bp)
GGTTGCCTGGTTACATTCCAAGTGT
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--868--10571Chr04:26291291..26291315 (25 bp)
TTCTCGTCGGTTAGGTACGTGTACA
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--374--611Chr04:26291237..26291261 (25 bp)
ATGCGAGCATGCTGTTTGCAACTTT
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--295--2531Chr04:26291127..26291151 (25 bp)
AACTTTCTGTGATTTTTCGTCGTCG
LOC_Os04g44760
OsAffx.26464.1.S1_s_at--1131--6491Chr04:26291117..26291141 (25 bp)
GATTTTTCGTCGTCGTACTCAAGGA
LOC_Os04g44760
Target Sequence 
TGGCTCCTGCCATGATTCCAAGCTTCCAACTCCAAGCTTCAGCAGTTCCTCTTAAAAAAAAAGCTTTGCGTGATCGAGTT
AAACGCTTGAATCATGCGAAACTTGTGGCGACGCGAGGACACGAACTTCCAGATGGGCCAAAAAACTTGCCAGTTGGTTG
CCTGGTTACATTCCAAGTGTGTTGGGAGTTTTATTTCTCGTCGGTTAGGTACGTGTACATTGTACAGTGTACTGAGATAG
TTATATATATGCGAGCATGCTGTTTGCAACTTTGCAAGGAAATGTCGGTTGCTACAAAGTGTTAGGCAGACGAATAGGAG
CCTGTGATATGAATGATATTGTTGATGTAGTTACATGGAACTTTCTGTGATTTTTCGTCGTCGTACTCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26464.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis