Browse Element(s) Details


Os.6205.1.S1_a_at

Description gb:AK070732.1
DB_XREF= gi:32980755
TID=Os.6205.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063I18, full insert sequence.
FL= gb:AK104359.1 gb:AK070732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4482011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0045045biological_processsecretory pathway
GO:0016020cellular_componentmembrane
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6205.1.S1_a_at--561--511Chr04:26314085..26314109 (25 bp)
ATCGATGATCGGCACCATGAGAACA
LOC_Os04g44820
Os.6205.1.S1_a_at--127--111Chr04:26314027..26314051 (25 bp)
ATTCGAGCCATCATTCCAGTGCAAC
LOC_Os04g44820
Os.6205.1.S1_a_at--385--10791Chr04:26313997..26314021 (25 bp)
TTGATTTTATTTACCCGCCATCACC
LOC_Os04g44820
Os.6205.1.S1_a_at--583--3171Chr04:26313972..26313996 (25 bp)
AATTGGGCGTGGCTTGATCCACTCG
LOC_Os04g44820
Os.6205.1.S1_a_at--377--3471Chr04:26313919..26313943 (25 bp)
CAGTGGCGGTGCTACCATGGGCATT
LOC_Os04g44820
Os.6205.1.S1_a_at--815--1031Chr04:26313886..26313910 (25 bp)
AGGTGCCACCGAGCATGTTCATGAG
LOC_Os04g44820
Os.6205.1.S1_a_at--380--731Chr04:26313872..26313896 (25 bp)
ATGTTCATGAGTCCCCACTATGTCA
LOC_Os04g44820
Os.6205.1.S1_a_at--974--10111Chr04:26313854..26313878 (25 bp)
TATGTCACGGCACACAATATGAGCT
LOC_Os04g44820
Os.6205.1.S1_a_at--488--6151Chr04:26313798..26313822 (25 bp)
GAGGTCACTGCATCAGATCTGGTTC
LOC_Os04g44820
Os.6205.1.S1_a_at--665--6251Chr04:26313726..26313750 (25 bp)
GATGGTGGTGTATTCCTTTTGTAAA
LOC_Os04g44820
Os.6205.1.S1_a_at--1069--7171Chr04:26313638..26313662 (25 bp)
GTCTGTATCGATAAGCATGTGCCTA
LOC_Os04g44820
Target Sequence 
ATCGATGATCGGCACCATGAGAACATGGAACCCAGCCCTCCACCACAACCGCTGCGGCATTCGAGCCATCATTCCAGTGC
AACTGAATTTGATTTTATTTACCCGCCATCACCAATTGGGCGTGGCTTGATCCACTCGACGGCTGGTGGTGTGCTTGGGG
GGATGGCAGTGGCGGTGCTACCATGGGCATTNCCGTGGCCAGGTGCCACCGAGCATGTTCATGAGTCCCCACTATGTCAC
GGCACACAATATGAGCTCTAGAGCGAGGAGACATCAGATGGAAGTTGAGAGGTCACTGCATCAGATCTGGTTCTTCCTCT
TCGTTTTTGTGGTGCTGTGCCTGCTCTTGTTCTGAAGCAAGATGGTGGTGTATTCCTTTTGTAAATACGGGAAGGCAAGA
CACTAATGGGTGGATGCATATGGTAAAAGAGGGTGGTTAACACTGTTGGTCTGTATCGATAAGCATGTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6205.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis