Browse Element(s) Details


Os.50280.1.S1_at

Description gb:AK120509.1
DB_XREF= gi:37990132
TID=Os.50280.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123H17, full insert sequence.
FL= gb:AK072297.1 gb:AK120509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4485010/11glycosyl transferase family 8 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50280.1.S1_at--380--8791Chr04:26335209..26335233 (25 bp)
TGTTCGAGTTCGGATCGGTGGCCTC
LOC_Os04g44850
Os.50280.1.S1_at--677--8651Chr04:26335297..26335321 (25 bp)
TGGGCCTCCACGAATGGGCCAACAT
LOC_Os04g44850
Os.50280.1.S1_at--697--10771Chr04:26335330..26335354 (25 bp)
TTGGAGTGGCCCTGTCGGTACTGAC
LOC_Os04g44850
Os.50280.1.S1_at--594--2151Chr04:26335353..26335377 (25 bp)
ACAGCCGGGCCCACATGTTGGTGAT
LOC_Os04g44850
Os.50280.1.S1_at--266--5191Chr04:26335419..26335443 (25 bp)
GCAATGGTTGTGTACAGCTGTCTTT
LOC_Os04g44850
Os.50280.1.S1_at--891--10531Chr04:26335483..26335507 (25 bp)
TTCAGATTCCATTCGTTTTAGACAG
LOC_Os04g44850
Os.50280.1.S1_at--428--5191Chr04:26335592..26335616 (25 bp)
GAATTAGGGCTATACACTTGTACTA
LOC_Os04g44850
Os.50280.1.S1_at--1137--2151Chr04:26335682..26335706 (25 bp)
ACACTCCATTTGTTAATTGCTTTCA
LOC_Os04g44850
Os.50280.1.S1_at--959--3171Chr04:26335716..26335740 (25 bp)
AATTGGATGTCGTTTCTTGGCGCAA
LOC_Os04g44850
Os.50280.1.S1_at--174--9591Chr04:26335730..26335754 (25 bp)
TCTTGGCGCAAATCTCAAATCAGGG
LOC_Os04g44850
Os.50280.1.S1_at--301--7571NONE
GGGCTCCCAATTTCAGGAATCTGAT
NONE
Target Sequence 
TGTTCGAGTTCGGATCGGTGGCCTCGCTGCTCTCGACACTCGTCGCGAGGTAGGTGTCGGCGCTGGGGCACTGACACTCC
GGCCCACTTGGGCCTCCACGAATGGGCCAACATGGCTGAGGTTGGAGTGGCCCTGTCGGTACTGACAGCCGGGCCCACAT
GTTGGTGATGGATGGCAAGATTTTGTTCGTGAGGGGAAGCTGACGACGCAGCAATGGTTGTGTACAGCTGTCTTTTTTTT
TTTTGCCTGTTTAAGGGAATAGATTACCAGATAATTCAGATTCCATTCGTTTTAGACAGGGTTAAAAATTCGTTGTTGAT
GTGTTCCATAATAAAATACGCNACAAAAAAANTATTGTCAAAGGAATATATTTTGGTATGTTTGGAATTAGGGCTATACA
CTTGTACTAGTAAATCAGATGTTTAGTGGAGATGTTGTTCTTGGGAAACGGGATAAAGCTTTGGTGTAAATGTAACACTC
CATTTGTTAATTGCTTTCAAGAACAGCTAATTGGATGTCGTTTCTTGGCGCAAATCTCAAATCAGGGGCTCCCAATTTCA
GGAATCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis