Browse Element(s) Details


Os.49088.1.S1_at

Description gb:AK103911.1
DB_XREF= gi:32989120
TID=Os.49088.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150P13, full insert sequence.
FL= gb:AK103911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4489011/11tRNA-dihydrouridine synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed
LOC_Os04g44920Os.14142.1.A1_at11/114+26361179..26363859oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein
LOC_Os04g44940NANA4+26370513..26370749hypothetical protein
LOC_Os04g44950OsAffx.4094.1.S1_x_at1/114+26371544..26373319oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49088.1.S1_at--503--4911Chr04:26351873..26351897 (25 bp)
GCTTCTCTGAAGCATTTTGGGACAT
LOC_Os04g44890
Os.49088.1.S1_at--130--10851Chr04:26351889..26351913 (25 bp)
TTGGGACATGTATTTTTGGCTGGAT
LOC_Os04g44890
Os.49088.1.S1_at--692--3111Chr04:26351918..26351942 (25 bp)
AATATATATTTGATCCATGCCAGGA
LOC_Os04g44890
Os.49088.1.S1_at--161--8171Chr04:26351940..26351964 (25 bp)
GGAACTAAGAACACCATTGCTTTTT
LOC_Os04g44890
Os.49088.1.S1_at--632--8811Chr04:26351964..26351988 (25 bp)
TGTTGCTTACATATTATCACTGCTA
LOC_Os04g44890
Os.49088.1.S1_at--3--391Chr04:26351979..26352003 (25 bp)
ATCACTGCTAATTCAGATGCCAAGG
LOC_Os04g44890
Os.49088.1.S1_at--687--2831Chr04:26352057..26352081 (25 bp)
AAGTAGTCAGTAGACCTTATGATCT
LOC_Os04g44890
Os.49088.1.S1_at--434--3691Chr04:26352080..26352104 (25 bp)
CTATTGATTGTATTACTCGGACGAT
LOC_Os04g44890
Os.49088.1.S1_at--835--3951Chr04:26352097..26352121 (25 bp)
CGGACGATATCCCAAATGCTTTAAT
LOC_Os04g44890
Os.49088.1.S1_at--359--2291Chr04:26352110..26352134 (25 bp)
AAATGCTTTAATTCGTCATGGCAAA
LOC_Os04g44890
Os.49088.1.S1_at--207--111Chr04:26352120..26352144 (25 bp)
ATTCGTCATGGCAAATTGGCATACC
LOC_Os04g44890
Target Sequence 
GCTTCTCTGAAGCATTTTGGGACATGTATTTTTGGCTGGATTGATAATATATATTTGATCCATGCCAGGAACTAAGAACA
CCATTGCTTTTTGTTGCTTACATATTATCACTGCTAATTCAGATGCCAAGGCTGGGGCATGTATTATTTGTTGAAACAAT
GTACTTTTTATTTTAAAAAGGTTCAAGTAGTCAGTAGACCTTATGATCTATTGATTGTATTACTCGGACGATATCCCAAA
TGCTTTAATTCGTCATGGCAAATTGGCATACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis