Browse Element(s) Details


Os.2225.1.S1_at

Description gb:AF090698.1
DB_XREF= gi:3603472
GEN=ERG3
TID=Os.2225.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2225 (NCBI UniGene Cluster)
DEF=Oryza sativa elicitor-responsive gene-3 (ERG3) mRNA, complete cds.
PROD=elicitor-responsive gene-3
FL= gb:AK063584.1 gb:AF090698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4487011/11Elicitor-responsive protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed
LOC_Os04g44920Os.14142.1.A1_at11/114+26361179..26363859oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2225.1.S1_at--410--2371Chr04:26340949..26340973 (25 bp)
AAACCTTTATGTTCAGCGTCACTCA
LOC_Os04g44870
Os.2225.1.S1_at--20--9711Chr04:26340971..26340995 (25 bp)
TCACAACGCTACAGAGCTCATCATC
LOC_Os04g44870
Os.2225.1.S1_at--968--2311Chr04:26341431..26341455 (25 bp)
AAAGTGGGCCTGACGTTCACTCCAG
LOC_Os04g44870
Os.2225.1.S1_at--769--6751Chr04:26341445..26341870 (25 bp)
GTTCACTCCAGAGGATGATCGCGAT
LOC_Os04g44870
Os.2225.1.S1_at--704--5391Chr04:26341923..26341947 (25 bp)
GAAGCAGATACTTTGATGTCGCACT
LOC_Os04g44870
Os.2225.1.S1_at--18--771Chr04:26341938..26341962 (25 bp)
ATGTCGCACTGCATCGCTATGGTAA
LOC_Os04g44870
Os.2225.1.S1_at--1161--811Chr04:26341956..26341980 (25 bp)
ATGGTAAGTCGTGTGCTGGAAGCCT
LOC_Os04g44870
Os.2225.1.S1_at--613--8171Chr04:26341973..26341997 (25 bp)
GGAAGCCTGGAACAAAGCCTATTGA
LOC_Os04g44870
Os.2225.1.S1_at--832--1111Chr04:26342051..26342075 (25 bp)
AGTGTTCGCCAATATGCTCTATATG
LOC_Os04g44870
Os.2225.1.S1_at--724--8731Chr04:26342074..26342098 (25 bp)
TGTAAGGACCTTGCTTTGATGCCCA
LOC_Os04g44870
Os.2225.1.S1_at--362--4871Chr04:26342086..26342110 (25 bp)
GCTTTGATGCCCACTAAACTGTAAT
LOC_Os04g44870
Target Sequence 
AAACCTTTATGTTCAGCGTCACTCACAACGCTACAGAGCTCATCATCAAGTTGATGGACAGTGACAGTGGCACGGATGAT
GATTTTGTTGGAGAAGCAACGATTTCTTTGGAAGCAATCTATACAGAAGGAAGCATACCCCCAACTGTTTATAATGTTGT
GAAAGAAGAAGAATACCGTGGAGAAATCAAAGTGGGCCTGACGTTCACTCCAGAGGATGATCGCGATCGGGGTTTATCTG
AGGAAGACATTGGTGGATGGAAGCAGTCATCTTGAGGAAGAAGCAGATACTTTGATGTCGCACTGCATCGCTATGGTAAG
TCGTGTGCTGGAAGCCTGGAACAAAGCCTATTGAAAAGAGCAGTCTTGTAGAAATACTTCTCATGATTTTCTAAAAGTTG
TAATAATAGTGTTCGCCAATATGCTCTATATGTAAGGACCTTGCTTTGATGCCCACTAAACTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis