Browse Element(s) Details


Os.14142.1.A1_at

Description gb:AK119481.1
DB_XREF= gi:37989104
TID=Os.14142.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-C01, full insert sequence.
FL= gb:AK119481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4492011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed
LOC_Os04g44920Os.14142.1.A1_at11/114+26361179..26363859oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein
LOC_Os04g44940NANA4+26370513..26370749hypothetical protein
LOC_Os04g44950OsAffx.4094.1.S1_x_at1/114+26371544..26373319oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44960NANA4+26379638..26385793retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.5.S1_x_at6/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.2.S1_x_at4/114+26386421..26389601retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14142.1.A1_at--708--7931Chr04:26363389..26363413 (25 bp)
GGATTTGTTCCTAGACGATTTCAAG
LOC_Os04g44920
Os.14142.1.A1_at--213--831Chr04:26363433..26363457 (25 bp)
ATGGTTGGCCAACCGGTGGATCTTC
LOC_Os04g44920
Os.14142.1.A1_at--722--8551Chr04:26363449..26363473 (25 bp)
TGGATCTTCCGCCTACAAAGTTGCC
LOC_Os04g44920
Os.14142.1.A1_at--552--2331Chr04:26363465..26363489 (25 bp)
AAAGTTGCCAAAGCTGCCCTTAATG
LOC_Os04g44920
Os.14142.1.A1_at--934--5331Chr04:26363512..26363536 (25 bp)
GAAGTACCCTACACTACGTATCAAC
LOC_Os04g44920
Os.14142.1.A1_at--953--6891Chr04:26363529..26363553 (25 bp)
GTATCAACTGTTTGACACCTGGTTA
LOC_Os04g44920
Os.14142.1.A1_at--991--2531Chr04:26363612..26363636 (25 bp)
AACTCCGTAAAGGTAGCTCTCTTGC
LOC_Os04g44920
Os.14142.1.A1_at--1022--4811Chr04:26363627..26363651 (25 bp)
GCTCTCTTGCCTGATGATGGTCCAA
LOC_Os04g44920
Os.14142.1.A1_at--819--6251Chr04:26363642..26363666 (25 bp)
GATGGTCCAACAGGTGCTTATTTTG
LOC_Os04g44920
Os.14142.1.A1_at--1121--8371Chr04:26363675..26363699 (25 bp)
GGCGAGGCATCTTTTGTGTGATCAT
LOC_Os04g44920
Os.14142.1.A1_at--1121--1171Chr04:26363700..26363724 (25 bp)
AGTTTCTGCTTTCTTTAACCTATAG
LOC_Os04g44920
Target Sequence 
GGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAG
TTGCCAAAGCTGCCCTTAATGCATACACAAGGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCT
GGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCTAGTAACTCCGTAAAGGTAGC
TCTCTTGCCTGATGATGGTCCAACAGGTGCTTATTTTGATCGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGC
TTTCTTTAACCTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14142.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis