Browse Element(s) Details


OsAffx.4093.1.S1_at

Description tigr:9632.m04313
TID=OsAffx.4093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Dihydrouridine synthase (Dus)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4489011/11tRNA-dihydrouridine synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed
LOC_Os04g44920Os.14142.1.A1_at11/114+26361179..26363859oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein
LOC_Os04g44940NANA4+26370513..26370749hypothetical protein
LOC_Os04g44950OsAffx.4094.1.S1_x_at1/114+26371544..26373319oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4093.1.S1_at--20--6351Chr04:26349219..26349243 (25 bp)
GATGCTACAGGTTTGTATGCTCAGT
LOC_Os04g44890
OsAffx.4093.1.S1_at--883--6911Chr04:26349233..26349257 (25 bp)
GTATGCTCAGTTAACATTTCTCAAT
LOC_Os04g44890
OsAffx.4093.1.S1_at--585--8771Chr04:26349264..26349288 (25 bp)
TGTTTAGTAAAGTAGCTGTCTGTTC
LOC_Os04g44890
OsAffx.4093.1.S1_at--384--1611Chr04:26349277..26349301 (25 bp)
AGCTGTCTGTTCAGTTTTACTATAA
LOC_Os04g44890
OsAffx.4093.1.S1_at--520--211Chr04:26349357..26349381 (25 bp)
ATTTGTCCCATTTGTGTTTCTTCCT
LOC_Os04g44890
OsAffx.4093.1.S1_at--519--7411Chr04:26349370..26349394 (25 bp)
GTGTTTCTTCCTTTACCAGTTATCA
LOC_Os04g44890
OsAffx.4093.1.S1_at--698--51Chr04:26349397..26349421 (25 bp)
ATTGAGCTTACTTTTCTACTACCCA
LOC_Os04g44890
OsAffx.4093.1.S1_at--685--4871Chr04:26349402..26349426 (25 bp)
GCTTACTTTTCTACTACCCAAAGCA
LOC_Os04g44890
OsAffx.4093.1.S1_at--397--2731Chr04:26349422..26349446 (25 bp)
AAGCAATCTATATGTACTGCGAGTG
LOC_Os04g44890
OsAffx.4093.1.S1_at--71--1971Chr04:26349437..26349461 (25 bp)
ACTGCGAGTGTTTCCTAAATACCAT
LOC_Os04g44890
OsAffx.4093.1.S1_at--782--3071Chr04:26349454..26349478 (25 bp)
AATACCATAGGAAACCGAACATCTG
LOC_Os04g44890
Target Sequence 
GATGCTACAGGTTTGTATGCTCAGTTAACATTTCTCAATTTTCTTTGTTTAGTAAAGTAGCTGTCTGTTCAGTTTTACTA
TAAATCTATAATTTGGCAGAGTATAGCAAACAGAGGGAGATATAGAAATGAATCTAAAATTTGTCCCATTTGTGTTTCTT
CCTTTACCAGTTATCAATATTGAGCTTACTTTTCTACTACCCAAAGCAATCTATATGTACTGCGAGTGTTTCCTAAATAC
CATAGGAAACCGAACATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis