Browse Element(s) Details


Os.16394.1.S1_at

Description gb:AK120331.1
DB_XREF= gi:37989954
TID=Os.16394.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058N01, full insert sequence.
FL= gb:AK120331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4484011/11Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16394.1.S1_at--773--2731Chr04:26324719..26324743 (25 bp)
AAGAAAATCAGCTTGTCCCGTTCGT
LOC_Os04g44840
Os.16394.1.S1_at--1093--6651Chr04:26324629..26324653 (25 bp)
GTTGAAGACATTGCCTCATGCGAGG
LOC_Os04g44840
Os.16394.1.S1_at--743--611Chr04:26324612..26324636 (25 bp)
ATGCGAGGCGCTGCAATTTCCTGTT
LOC_Os04g44840
Os.16394.1.S1_at--129--3131Chr04:26324598..26324622 (25 bp)
AATTTCCTGTTCACATCTCGGTTTC
LOC_Os04g44840
Os.16394.1.S1_at--7--611Chr04:26324547..26324571 (25 bp)
ATGCCGTTCTATTGTTCGCGAGTTC
LOC_Os04g44840
Os.16394.1.S1_at--861--6051Chr04:26324528..26324552 (25 bp)
GAGTTCGAAACCAAGCTTTCCAGGA
LOC_Os04g44840
Os.16394.1.S1_at--605--1251Chr04:26324486..26324510 (25 bp)
AGTTGGCTTTGAGCGTGTGCACACT
LOC_Os04g44840
Os.16394.1.S1_at--713--9171Chr04:26324462..26324486 (25 bp)
TGCCGCTGGCAGATCAACCGATGTG
LOC_Os04g44840
Os.16394.1.S1_at--630--3351Chr04:26324335..26324359 (25 bp)
CACGAGTTGCTCATCGAGGCATGAC
LOC_Os04g44840
Os.16394.1.S1_at--678--1331Chr04:26324308..26324332 (25 bp)
AGAGGTTACCTTTGTGTCACATCTG
LOC_Os04g44840
Os.16394.1.S1_at--1066--4011Chr04:26324282..26324306 (25 bp)
CGTCTCTACAGTCCGGAGTTCAAGT
LOC_Os04g44840
Target Sequence 
AAGAAAATCAGCTTGTCCCGTTCGTCAGTTCCAGATCTTATCAGCAGAAAGCCTGCATACACAAGGAGGGATGGAGTAGA
TTATGTCCAAGTTGAAGACATTGCCTCATGCGAGGCGCTGCAATTTCCTGTTCACATCTCGGTTTCCAACGATGGTGCCA
TGGACGGGAGCCATGCCGTTCTATTGTTCGCGAGTTCGAAACCAAGCTTTCCAGGATCCCCTATAAAACAGCTAGTTGGC
TTTGAGCGTGTGCACACTGCCGCTGGCAGATCAACCGATGTGGAGATCACCGTCGACCCCTGCAAGCTTATGAGCTTTGC
CAACACCGAAGGCACAAGGGTGCTGTTCCTGGGAACACATGTTNTGATGGTGGGAGACGAAGAGCACGAGTTGCTCATCG
AGGCATGACAAAGAGGTTACCTTTGTGTCACATCTGCCGTCTCTACAGTCCGGAGTTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis