Browse Element(s) Details


OsAffx.4092.1.S1_s_at

Description tigr:9632.m04303
TID=OsAffx.4092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=beta-expansin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4478011/11Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4092.1.S1_s_at--724--9831Chr04:26299964..26299988 (25 bp)
TACAAGGTGAAGTGCCTCGACCACG
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--670--3391Chr04:26300077..26300101 (25 bp)
CAGCGGCGCCGCATTCAGCAGGATG
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--545--4411Chr04:26300139..26300163 (25 bp)
GCCAGCTGTCGGTCGTCTACAGAAG
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--298--5491Chr04:26300732..26300756 (25 bp)
GAACATAGCCTTCCGTGTAAACGAG
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--550--3551Chr04:26300741..26300765 (25 bp)
CTTCCGTGTAAACGAGGGCTCGACG
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--1030--7571Chr04:26300756..26300780 (25 bp)
GGGCTCGACGAACTTCTGGCTGTCA
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--836--3911Chr04:26300771..26300795 (25 bp)
CTGGCTGTCACTGCTGGTCGAGTTC
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--504--4111Chr04:26302185..26302209 (25 bp)
CGAACTCAGTGGAGTGGCTGGACAT
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--273--4171Chr04:26302262..26302286 (25 bp)
CCCTTCTCGGTGAGGTTGACGACGC
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--969--10751Chr04:26302277..26302301 (25 bp)
TTGACGACGCTGTCGGCCCAGAAGG
LOC_Os04g44780
OsAffx.4092.1.S1_s_at--536--5691Chr04:26302316..26302340 (25 bp)
GACGTCATCCCCAGGAACTGGAAGC
LOC_Os04g44780
Target Sequence 
TACAAGGTGAAGTGCCTCGACCACGGCATCTGCTCCCGCCGCGCCGTCACGGTCATCGTCACCGACGAGTGCCCCGGCGG
GCTGTGCGCCTTCGGCCGCACGCACTTCGACCTCAGCGGCGCCGCATTCAGCAGGATGGCGGTCGCCGGCGCCGGCGGCC
ACCTGCGAGACCGAGGCCAGCTGTCGGTCGTCTACAGAAGGACTGCGTGCAAGTACGGCGGGAAGAACATAGCCTTCCGT
GTAAACGAGGGCTCGACGAACTTCTGGCTGTCACTGCTGGTCGAGTTCGAGGACGGCCAGGGCGACATTGGATCCATGCA
GATAAAGCAGGATTTAGTCCTTTGTTCCAATACAAGTTTACACAAAAGAAGGGAGCACTTGCGAGACAGGATAGCGAACT
CAGTGGAGTGGCTGGACATGAAGCATGTGTGGGGGGCCACGTGGTGCCTCGTGCGGGGCCCGCTTGTCGGGCCCTTCTCG
GTGAGGTTGACGACGCTGTCGGCCCAGAAGGCGCTCACGGCCCGGGACGTCATCCCCAGGAACTGGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4092.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis