Browse Element(s) Details


OsAffx.4091.1.S1_at

Description tigr:9632.m04299
TID=OsAffx.4091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyltransferase sugar-binding region containing DXD motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4474011/11Alpha 1,4-glycosyltransferase conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44700Os.53736.1.S1_at11/114+26256387..26261046WD-40 repeat family protein, putative, expressed
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4091.1.S1_at--73--3951Chr04:26287369..26287393 (25 bp)
CGTGTTAAGCCCTCAAAATCCGTAG
LOC_Os04g44740
OsAffx.4091.1.S1_at--818--2251Chr04:26287384..26287408 (25 bp)
AAATCCGTAGCAGTCCAAGGCAGCC
LOC_Os04g44740
OsAffx.4091.1.S1_at--953--8251Chr04:26287402..26287426 (25 bp)
GGCAGCCTGATCATTTTGCAGACCT
LOC_Os04g44740
OsAffx.4091.1.S1_at--852--5211Chr04:26287427..26287451 (25 bp)
GAATTTCAGAATCCCGTAGGCGATG
LOC_Os04g44740
OsAffx.4091.1.S1_at--48--1411Chr04:26287533..26287557 (25 bp)
AGACTTCTTGCTGCTCTGTATTAAA
LOC_Os04g44740
OsAffx.4091.1.S1_at--1018--8811Chr04:26287558..26287582 (25 bp)
TGTTGTGTATCCTCAAGCTCTATCT
LOC_Os04g44740
OsAffx.4091.1.S1_at--758--2091Chr04:26287613..26287637 (25 bp)
ACATCATCTCAATCTGCTCCAGAGT
LOC_Os04g44740
OsAffx.4091.1.S1_at--897--2331Chr04:26287707..26287731 (25 bp)
AAAGAACATTCCTGCCACTGATATA
LOC_Os04g44740
OsAffx.4091.1.S1_at--490--9891Chr04:26287788..26287812 (25 bp)
TACTTGACCTAGTGCCGATGCTTGA
LOC_Os04g44740
OsAffx.4091.1.S1_at--283--2371Chr04:26287882..26287906 (25 bp)
AAAGCCACATTTCCACAAACTGCAA
LOC_Os04g44740
OsAffx.4091.1.S1_at--234--2551Chr04:26287908..26287932 (25 bp)
AACTGCTAGGTCAATCCCAATTCTT
LOC_Os04g44740
Target Sequence 
CGTGTTAAGCCCTCAAAATCCGTAGCAGTCCAAGGCAGCCTGATCATTTTGCAGACCTGAATTTCAGAATCCCGTAGGCG
ATGGAAGCAGGATAAGTATGGTTCATCATTGAACATCGAATGATTTCGAATTTATTGTTTCTAATAGTGTCAGCCTAGAG
ACACAGACTTCTTGCTGCTCTGTATTAAATGTTGTGTATCCTCAAGCTCTATCTCACTCCCTCTCCATTCTTTCCCACCT
TCAAACATCATCTCAATCTGCTCCAGAGTTTTCCCTTTCGTTTCTGGCACGCAGAAATACACAAAGGCCACAGAGACAGT
CGAGATAACCGCAAAGACAAAGAACATTCCTGCCACTGATATAATACGGGCCATGGAAAGAAATGACATGGAAACCAAAC
CACTGCTCACTCTACCACCTACTTGACCTAGTGCCGATGCTTGAGCTCGTAATCTCAAAGGAAATATCTCTGAAGACAAG
ACCCAACATATTGGACCCATGCCAATTGAAAAGAAAGCCACATTTCCACAAACTGCAAAAACTGCTAGGTCAATCCCAAT
TCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis