Browse Element(s) Details


Os.28068.1.S1_at

Description gb:AK105586.1
DB_XREF= gi:32990795
TID=Os.28068.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A02, full insert sequence.
FL= gb:AK105586.1 gb:AK121439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g447909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28068.1.S1_at--1018--1131Chr04:26303825..26303849 (25 bp)
AGTCGCCAAGCCCAGTAGCAGGAAG
NONE
Os.28068.1.S1_at--378--3811Chr04:26303870..26303894 (25 bp)
CTCCGTCTCCGATCAGGAAGAGGAT
NONE
Os.28068.1.S1_at--514--5931Chr04:26304015..26304039 (25 bp)
GAGCATCAAGCACTGAAGCGATCGA
LOC_Os04g44790
Os.28068.1.S1_at--485--9351Chr04:26304036..26304060 (25 bp)
TCGAAGCGTCGACGAACCATCCGAT
LOC_Os04g44790
Os.28068.1.S1_at--1112--4311Chr04:26304052..26304076 (25 bp)
CCATCCGATCCGACATATTGTTTGA
LOC_Os04g44790
Os.28068.1.S1_at--753--151Chr04:26304098..26304122 (25 bp)
ATTAGTACTTGATTGCCCTGTGCGA
LOC_Os04g44790
Os.28068.1.S1_at--740--7491Chr04:26304128..26304152 (25 bp)
GTGGTTTTGTAGTAGTTCCTTCTAT
LOC_Os04g44790
Os.28068.1.S1_at--35--5231Chr04:26304161..26304185 (25 bp)
GAATTTCGTGTGAGATCGCCTGTAA
LOC_Os04g44790
Os.28068.1.S1_at--507--1191Chr04:26304198..26304222 (25 bp)
AGTATTGGTCTATTTTCCCCTTGAT
LOC_Os04g44790
Os.28068.1.S1_at--424--1071Chr04:26304266..26304290 (25 bp)
AGGGATCTGCCTGTCAATATTCGAT
LOC_Os04g44790
Os.28068.1.S1_at--742--3111Chr04:26304281..26304305 (25 bp)
AATATTCGATACTCCTTGCTTAGGA
LOC_Os04g44790
Target Sequence 
AGTCGCCAAGCCCAGTAGCAGGAAGAGATCAGATTTCTTTTTCGCCTCCGTCTCCGATCAGGAAGAGGATGGGCGGATTC
GATCTGCAGGTGAAGGAGAGGGCCAAGGAGCTGAAGCACCTCAAGGGGGCGGTGATGAAGGGCGTCAAGGTGGTCGGCGA
CTCGTGCAAGAAGGCGTGGAACAAGGTCAAGAGCATCAAGCACTGAAGCGATCGAAGCGTCGACGAACCATCCGATCCGA
CATATTGTTTGAGTAGATTCATCTAGTATGATTATTAGTACTTGATTGCCCTGTGCGATCGGGGTGGTTTTGTAGTAGTT
CCTTCTATTTGAGATAGAATTTCGTGTGAGATCGCCTGTAAGGATGGCTTTATAGTATTGGTCTATTTTCCCCTTGATGG
ATTGGTGTTCTTTGATCTTTTTTGGTGAAATCTGTGGTGATAGGGATCTGCCTGTCAATATTCGATACTCCTTGCTTAGG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis