Browse Element(s) Details

Os.51352.1.S1_x_at

Description

gb:AK062618.1
DB_XREF= gi:32972636
TID=Os.51352.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-B05, full insert sequence.
FL= gb:AK062618.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g44800	7/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g44730	OsAffx.4090.1.S1_s_at	11/11	4	+	26279872..26284112	Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730	Os.10728.1.S1_at	1/11	4	+	26279872..26284112	Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740	Os.7583.1.S1_x_at	11/11	4	+	26285142..26288130	Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740	OsAffx.4091.1.S1_at	11/11	4	+	26285142..26288130	Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750	Os.8185.1.S1_s_at	11/11	4	+	26286987..26289714	Sugar transporter family protein, expressed
LOC_Os04g44760	OsAffx.26464.1.S1_at	11/11	4	+	26290979..26291737	hypothetical protein
LOC_Os04g44760	OsAffx.26464.1.S1_s_at	11/11	4	+	26290979..26291737	hypothetical protein
LOC_Os04g44770	Os.52295.1.S1_at	11/11	4	+	26292269..26296227	expressed protein
LOC_Os04g44770	Os.10093.4.S1_s_at	1/11	4	+	26292269..26296227	expressed protein
LOC_Os04g44780	Os.54957.1.S1_at	11/11	4	+	26299692..26302965	Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780	OsAffx.4092.1.S1_s_at	11/11	4	+	26299692..26302965	Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780	OsAffx.4092.1.S1_at	7/11	4	+	26299692..26302965	Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790	Os.28068.1.S1_at	9/11	4	+	26303893..26304457	hypothetical protein
LOC_Os04g44800	Os.6331.1.S1_at	9/11	4	+	26305176..26309286	expressed protein
LOC_Os04g44800	Os.51352.1.S1_x_at	7/11	4	+	26305176..26309286	expressed protein
LOC_Os04g44800	OsAffx.12383.1.S1_at	1/11	4	+	26305176..26309286	expressed protein
LOC_Os04g44810	Os.12341.1.S1_at	11/11	4	+	26309423..26312627	Syntaxin 81, putative, expressed
LOC_Os04g44820	Os.6205.1.S1_a_at	11/11	4	+	26313540..26316878	Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830	Os.7403.1.S1_at	11/11	4	+	26321378..26323883	Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840	Os.16394.1.S1_at	11/11	4	+	26324156..26327834	Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850	Os.50280.1.S1_at	10/11	4	+	26333891..26335808	glycosyl transferase family 8 protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008026	molecular_function	ATP-dependent helicase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51352.1.S1_x_at--953--451	1	Chr04:26309110..26309134 (25 bp)	GCCGCAGCAAGTCCATAGAAGCCGA	LOC_Os04g44800
Os.51352.1.S1_x_at--459--517	1	Chr04:26309104..26309128 (25 bp)	GCAAGTCCATAGAAGCCGACGAGGA	LOC_Os04g44800
Os.51352.1.S1_x_at--701--401	1	Chr04:26308873..26308897 (25 bp)	CGTCGTCGGAGTCTGAGTCCGAATC	LOC_Os04g44800
Os.51352.1.S1_x_at--1149--609	1	Chr04:26308865..26308889 (25 bp)	GAGTCTGAGTCCGAATCCGAGTCTT	LOC_Os04g44800
Os.51352.1.S1_x_at--619--609	1	Chr04:26308859..26308883 (25 bp)	GAGTCCGAATCCGAGTCTTCTTACT	LOC_Os04g44800
Os.51352.1.S1_x_at--1057--113	1	Chr04:26308846..26308870 (25 bp)	AGTCTTCTTACTCGGATTGCAGTGC	LOC_Os04g44800
Os.51352.1.S1_x_at--132--783	1	Chr04:26308819..26308843 (25 bp)	GGTCAGAGAGCGAGACAGACTCAGA	LOC_Os04g44800
Os.51352.1.S1_x_at--321--5	1	Chr01:41305140..41305164 (25 bp)	ATTGTACCACATGCAGAATCTCTCG	NONE
Os.51352.1.S1_x_at--445--697	1	Chr01:41305143..41305167 (25 bp)	GTACCACATGCAGAATCTCTCGAAA	NONE
Os.51352.1.S1_x_at--405--505	1	Chr01:41305152..41305176 (25 bp)	GCAGAATCTCTCGAAAATGTCAAGG	NONE
Os.51352.1.S1_x_at--517--295	1	Chr01:41305167..41305191 (25 bp)	AATGTCAAGGCCCAAATGGCGCCAC	NONE

Target Sequence

GCCGCAGCAAGTCCATAGAAGCCGACGAGGAGGAGCGTTCGAAGGGGAGACGGGACCGGGACCGGGACCGCCGTGGCAAG
TCGAAGAGGCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGACGCCGGGAGCGAGTCCTCCGGCGAGGACTCAGG
CGAGCGGCGGAAGCGGCGCAGGAAGGAAAAGGAGCGGCGGCATCGGCGGCGCCGGAGCCGTAGCGCGAGCTCGGGCTCGT
CGTCGGAGTCTGAGTCCGAATCCGAGTCTTCTTACTCGGATTGCAGTGCGGGGTCAGAGAGCGAGACAGACTCAGAGGAG
GAGAGGCGAAGGAGGCGGCGGCGGAGGAGGAGGAAGGAGAGGGAGGAGGAGGAGAGGAGGCGGAGGAGGAAGGATAAGGA
AAGAAGGAAGAGGAAGGAGAAGGAGAGGGAGAGGGAGAGAAAGAAAAAGGAGAAGAAGAAAAATTCATTTTTCAATGAGT
ACTAAAAATTTTAAAAAGGGTAAAAACTTGAAGAAAATTTATGGAAAAAAATTGTACCACATGCAGAATCTCTCGAAAAT
GTCAAGGCCCAAATGGCGCCAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis