Browse Element(s) Details


OsAffx.4092.1.S1_at

Description tigr:9632.m04303
TID=OsAffx.4092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=beta-expansin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g447807/11Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4092.1.S1_at--191--7811NONE
GGTCGTCTACAGAAGGACTGCGTGC
NONE
OsAffx.4092.1.S1_at--78--4031NONE
CGTCTACAGAAGGACTGCGTGCAAG
NONE
OsAffx.4092.1.S1_at--143--9051NONE
TGCAGATAAAGCAGGATTTAGTCCT
NONE
OsAffx.4092.1.S1_at--473--1531Chr04:26301357..26301379 (23 bp)
AGCAGGATTTAGTCCTTTGTTCCAA
LOC_Os04g44780
OsAffx.4092.1.S1_at--785--7931Chr04:26301359..26301383 (25 bp)
GGATTTAGTCCTTTGTTCCAATACA
LOC_Os04g44780
OsAffx.4092.1.S1_at--762--10051Chr04:26301364..26301388 (25 bp)
TAGTCCTTTGTTCCAATACAAGTTT
LOC_Os04g44780
OsAffx.4092.1.S1_at--871--6671Chr04:26301373..26301397 (25 bp)
GTTCCAATACAAGTTTACACAAAAG
LOC_Os04g44780
OsAffx.4092.1.S1_at--706--2011Chr04:26301385..26301409 (25 bp)
GTTTACACAAAAGAAGGGAGCACTT
LOC_Os04g44780
OsAffx.4092.1.S1_at--1161--2871Chr04:26301398..26301422 (25 bp)
AAGGGAGCACTTGCGAGACAGGATA
LOC_Os04g44780
OsAffx.4092.1.S1_at--231--5071Chr04:26301404..26301423 (20 bp)
GCACTTGCGAGACAGGATAGCGAAC
LOC_Os04g44780
OsAffx.4092.1.S1_at--767--1411NONE
AGACAGGATAGCGAACTCAGTGGAG
NONE
Target Sequence 
GGTCGTCTACAGAAGGACTGCGTGCAAGTACGGCGGGAAGAACATAGCCTTCCGTGTAAACGAGGGCTCGACGAACTTCT
GGCTGTCACTGCTGGTCGAGTTCGAGGACGGCCAGGGCGACATTGGATCCATGCAGATAAAGCAGGATTTAGTCCTTTGT
TCCAATACAAGTTTACACAAAAGAAGGGAGCACTTGCGAGACAGGATAGCGAACTCAGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis