Browse Element(s) Details


Os.8185.1.S1_s_at

Description gb:AK069679.1
DB_XREF= gi:32979703
TID=Os.8185.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028O21, full insert sequence.
FL= gb:AK101735.1 gb:AK069679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4475011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8185.1.S1_s_at--44--2751Chr04:26287517..26287541 (25 bp)
AAGAAGTCTGTGTCTCTAGGCTGAC
LOC_Os04g44750
Os.8185.1.S1_s_at--321--6311Chr04:26287451..26287475 (25 bp)
GATGAACCATACTTATCCTGCTTCC
LOC_Os04g44750
Os.8185.1.S1_s_at--489--471Chr04:26287426..26287450 (25 bp)
ATCGCCTACGGGATTCTGAAATTCA
LOC_Os04g44750
Os.8185.1.S1_s_at--883--2991Chr04:26287392..26287416 (25 bp)
AATGATCAGGCTGCCTTGGACTGCT
LOC_Os04g44750
Os.8185.1.S1_s_at--841--5711Chr04:26287374..26287398 (25 bp)
GACTGCTACGGATTTTGAGGGCTTA
LOC_Os04g44750
Os.8185.1.S1_s_at--649--4871Chr04:26287304..26287328 (25 bp)
GCTTTACACAACTACATCCCAAAAT
LOC_Os04g44750
Os.8185.1.S1_s_at--284--8771Chr04:26287253..26287277 (25 bp)
TGTATATGGCGGTATCTTCCACCTA
LOC_Os04g44750
Os.8185.1.S1_s_at--1066--6651Chr04:26287213..26287237 (25 bp)
GTTGAAGTTCCTTATTCCACAGTTT
LOC_Os04g44750
Os.8185.1.S1_s_at--517--1331Chr04:26287173..26287197 (25 bp)
AGAGGTGTGTGATTTCCAACTGAAT
LOC_Os04g44750
Os.8185.1.S1_s_at--209--6371Chr04:26287130..26287154 (25 bp)
GATCCAGCTTTTTGATTTAGTCCTT
LOC_Os04g44750
Os.8185.1.S1_s_at--305--9831Chr04:26287068..26287092 (25 bp)
TAAAACCTTCAAGACCATGCCATGT
LOC_Os04g44750
Target Sequence 
AAGAAGTCTGTGTCTCTAGGCTGACACTATTAGAAACAATAAATTCGAAATCATTCGATGTTCAATGATGAACCATACTT
ATCCTGCTTCCATCGCCTACGGGATTCTGAAATTCAGGTCTGCAAAATGATCAGGCTGCCTTGGACTGCTACGGATTTTG
AGGGCTTAACACGAGTATATTAGGTGTAGGCGCAAAACAGCATGTAAATGTCTGCTTTACACAACTACATCCCAAAATGT
TACCTGGGAGGACACAGATGATGTTGTATATGGCGGTATCTTCCACCTACCAAAAAATATAGTTGTTGAAGTTCCTTATT
CCACAGTTTAATTTTAATAGAGGAAGAGGTGTGTGATTTCCAACTGAATGAATTCTGTGTGATTCTTGATCCAGCTTTTT
GATTTAGTCCTTCATGATATTGTAGTACTGTGGCTTTGTTGGTNTAGTATAAAACCTTCAAGACCATGCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8185.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis