Browse Element(s) Details


OsAffx.26466.1.S1_at

Description tigr:9632.m04312
TID=OsAffx.26466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed
LOC_Os04g44920Os.14142.1.A1_at11/114+26361179..26363859oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26466.1.S1_at--660--3831Chr04:26344368..26344392 (25 bp)
CTGCGGCCACAGGATGACGAGAGCG
LOC_Os04g44880
OsAffx.26466.1.S1_at--588--3991Chr04:26344333..26344357 (25 bp)
CGTGGAAGCGCCACGCACTCGTGGC
LOC_Os04g44880
OsAffx.26466.1.S1_at--97--4251Chr04:26344231..26344255 (25 bp)
CCGGGACAGGCGATACGGCGGCGGC
LOC_Os04g44880
OsAffx.26466.1.S1_at--621--7371Chr04:26343525..26343544 (20 bp)
GTGACGGTCAAAGGACAACCACACT
LOC_Os04g44880
OsAffx.26466.1.S1_at--301--7091Chr04:26343519..26343543 (25 bp)
GTCAAAGGACAACCACACTCTCACG
LOC_Os04g44880
OsAffx.26466.1.S1_at--430--2311Chr04:26343516..26343540 (25 bp)
AAAGGACAACCACACTCTCACGCTA
LOC_Os04g44880
OsAffx.26466.1.S1_at--384--2211Chr04:26343511..26343535 (25 bp)
ACAACCACACTCTCACGCTATGGAG
LOC_Os04g44880
OsAffx.26466.1.S1_at--469--1711Chr04:26343508..26343532 (25 bp)
ACCACACTCTCACGCTATGGAGTGA
LOC_Os04g44880
OsAffx.26466.1.S1_at--1--2011Chr04:26343503..26343527 (25 bp)
ACTCTCACGCTATGGAGTGAAAATT
LOC_Os04g44880
OsAffx.26466.1.S1_at--831--5491Chr04:26343485..26343509 (25 bp)
GAAAATTAAGCTATACTACTCCAAG
LOC_Os04g44880
OsAffx.26466.1.S1_at--854--10491Chr04:26343480..26343504 (25 bp)
TTAAGCTATACTACTCCAAGTCATC
LOC_Os04g44880
Target Sequence 
CTGCGGCCACAGGATGACGAGAGCGGACGTGGCGGCGTGGAAGCGCCACGCACTCGTGGCTCCGACGAAGAAGACGACGA
CGATGGCGGCGTCGCGCGCTGCGACGACGACGACGACCTTCCCGATCCCGACGGTGGCCGGGACAGGCGATACGGCGGCG
GCGCTCGGTGACGGTCAAAGGACAACCACACTCTCACGCTATGGAGTGAAAATTAAGCTATACTACTCCAAGTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis