Browse Element(s) Details


OsAffx.4105.1.S1_at

Description tigr:9632.m04453
TID=OsAffx.4105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ethylene responsive element binding factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4624011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46240OsAffx.4105.1.S1_at11/114+27179211..27180167AP2 domain containing protein, expressed
LOC_Os04g46250Os.30193.1.S1_at11/114+27189894..27191292AP2 domain containing protein, expressed
LOC_Os04g46260NANA4+27197086..27197448hypothetical protein
LOC_Os04g46270OsAffx.26483.1.S1_x_at11/114+27201122..27203297hypothetical protein
LOC_Os04g46270OsAffx.22651.1.S1_x_at3/114+27201122..27203297hypothetical protein
LOC_Os04g46270Os.49487.1.S1_at1/114+27201122..27203297hypothetical protein
LOC_Os04g46280Os.14384.1.S1_at11/114+27204350..27207121Nudix hydrolase 8, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4105.1.S1_at--52--6411Chr04:27179909..27179933 (25 bp)
GATCGGAGTGGCAAACAAGGCTGTA
LOC_Os04g46240
OsAffx.4105.1.S1_at--441--9431Chr04:27179911..27179935 (25 bp)
TCGGAGTGGCAAACAAGGCTGTAAA
LOC_Os04g46240
OsAffx.4105.1.S1_at--956--871Chr04:27179926..27179950 (25 bp)
AGGCTGTAAAGACCGAAGCGCCGAC
LOC_Os04g46240
OsAffx.4105.1.S1_at--975--9891Chr04:27179958..27179982 (25 bp)
TACTCATCGTCGTCACTGTCATCCA
LOC_Os04g46240
OsAffx.4105.1.S1_at--760--9611Chr04:27179961..27179985 (25 bp)
TCATCGTCGTCACTGTCATCCATGT
LOC_Os04g46240
OsAffx.4105.1.S1_at--920--5751Chr04:27180020..27180044 (25 bp)
GACGTCGACTGGGTCGTCGGAGCCC
LOC_Os04g46240
OsAffx.4105.1.S1_at--533--7191Chr04:27180035..27180059 (25 bp)
GTCGGAGCCCACGAGTTTTCCGGTG
LOC_Os04g46240
OsAffx.4105.1.S1_at--154--5871Chr04:27180039..27180063 (25 bp)
GAGCCCACGAGTTTTCCGGTGGTGA
LOC_Os04g46240
OsAffx.4105.1.S1_at--981--4251Chr04:27180041..27180065 (25 bp)
GCCCACGAGTTTTCCGGTGGTGACG
LOC_Os04g46240
OsAffx.4105.1.S1_at--804--6051Chr04:27180047..27180071 (25 bp)
GAGTTTTCCGGTGGTGACGCCGTCG
LOC_Os04g46240
OsAffx.4105.1.S1_at--616--1611Chr04:27180078..27180102 (25 bp)
AGCTGGGACCAGTACTGGGACGGCC
LOC_Os04g46240
Target Sequence 
GATCGGAGTGGCAAACAAGGCTGTAAAGACCGAAGCGCCGACGTCCGCCTACTCATCGTCGTCACTGTCATCCATGTCGC
GGGACACGACGGCGACCACGTCGTCGGCGGGGACGTCGACTGGGTCGTCGGAGCCCACGAGTTTTCCGGTGGTGACGCCG
TCGAGCTGGAGCTGGGACCAGTACTGGGACGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis