Browse Element(s) Details


Os.14384.1.S1_at

Description gb:AK065996.1
DB_XREF= gi:32976014
TID=Os.14384.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047F16, full insert sequence.
FL= gb:AK060404.1 gb:AK065996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4628011/11Nudix hydrolase 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46240OsAffx.4105.1.S1_at11/114+27179211..27180167AP2 domain containing protein, expressed
LOC_Os04g46250Os.30193.1.S1_at11/114+27189894..27191292AP2 domain containing protein, expressed
LOC_Os04g46260NANA4+27197086..27197448hypothetical protein
LOC_Os04g46270OsAffx.26483.1.S1_x_at11/114+27201122..27203297hypothetical protein
LOC_Os04g46270OsAffx.22651.1.S1_x_at3/114+27201122..27203297hypothetical protein
LOC_Os04g46270Os.49487.1.S1_at1/114+27201122..27203297hypothetical protein
LOC_Os04g46280Os.14384.1.S1_at11/114+27204350..27207121Nudix hydrolase 8, putative, expressed
LOC_Os04g46290Os.9806.1.S1_at11/114+27207659..27210781UPF0326 protein hag1, putative, expressed
LOC_Os04g46300Os.52210.1.S1_at11/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300OsAffx.32256.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300Os.47372.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
GO:0047631molecular_functionADP-ribose diphosphatase activity
GO:0051287molecular_functionNAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14384.1.S1_at--554--991Chr04:27206533..27206557 (25 bp)
AGGAGGTCGACGCTGTACTACAACG
LOC_Os04g46280
Os.14384.1.S1_at--56--7131Chr04:27206617..27206641 (25 bp)
GTCAGGTTCGCGTTGTGATCTAGCA
LOC_Os04g46280
Os.14384.1.S1_at--1095--6411Chr04:27206633..27206657 (25 bp)
GATCTAGCATTAGGCTCTGTGCAAT
LOC_Os04g46280
Os.14384.1.S1_at--239--9051Chr04:27206662..27206686 (25 bp)
TGCAGAGTCTCGAGTACAGCGACCT
LOC_Os04g46280
Os.14384.1.S1_at--406--4611Chr04:27206680..27206704 (25 bp)
GCGACCTGGGTAACTGCTTGTGAAG
LOC_Os04g46280
Os.14384.1.S1_at--421--3931Chr04:27206766..27206790 (25 bp)
CGGCTGTTGCAGTTTCACGTAGATT
LOC_Os04g46280
Os.14384.1.S1_at--248--3131Chr04:27206829..27206853 (25 bp)
AATTTCGTTTCTGTGTATGCGCTCA
LOC_Os04g46280
Os.14384.1.S1_at--572--10091Chr04:27206936..27206960 (25 bp)
TAGGATGTGATTGCGCTCCGAGTTC
LOC_Os04g46280
Os.14384.1.S1_at--990--4051Chr04:27206954..27206978 (25 bp)
CGAGTTCTGCACTTACGCGAACAGT
LOC_Os04g46280
Os.14384.1.S1_at--857--9691Chr04:27207014..27207038 (25 bp)
TCAAATGTGTATGCAACCCCTTCTT
LOC_Os04g46280
Os.14384.1.S1_at--945--5371Chr04:27207059..27207083 (25 bp)
GAAGAACCTCCTGAATGTCTCATCA
LOC_Os04g46280
Target Sequence 
AGGAGGTCGACGCTGTACTACAACGTTTNCTGAACCTGAGGATGTGAACTGCAATGCTTNCTTGACAACGGATCGCCCAA
CCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGT
AACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCT
GTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATTTCGTTTCTGTGTATGCGC
TCACGCTAAGCAGCTGCTTAATGTGTATCTAGTGTTGCTATGGCGAAAGCAAAGGACACGTACACACCAAGAACCAGGAC
ACTAGTAGGATGTGATTGCGCTCCGAGTTCTGCACTTACGCGAACAGTGTGCCAAAATTTAGGTACTTGCAACATTGCAA
GTATCAAATGTGTATGCAACCCCTTCTTTGCGCGTGCAAAGTATAATTGAAGAACCTCCTGAATGTCTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis