Browse Element(s) Details


Os.52210.1.S1_at

Description gb:AK065659.1
DB_XREF= gi:32975677
TID=Os.52210.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042N16, full insert sequence.
FL= gb:AK065659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4630011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46250Os.30193.1.S1_at11/114+27189894..27191292AP2 domain containing protein, expressed
LOC_Os04g46260NANA4+27197086..27197448hypothetical protein
LOC_Os04g46270OsAffx.26483.1.S1_x_at11/114+27201122..27203297hypothetical protein
LOC_Os04g46270OsAffx.22651.1.S1_x_at3/114+27201122..27203297hypothetical protein
LOC_Os04g46270Os.49487.1.S1_at1/114+27201122..27203297hypothetical protein
LOC_Os04g46280Os.14384.1.S1_at11/114+27204350..27207121Nudix hydrolase 8, putative, expressed
LOC_Os04g46290Os.9806.1.S1_at11/114+27207659..27210781UPF0326 protein hag1, putative, expressed
LOC_Os04g46300Os.52210.1.S1_at11/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300OsAffx.32256.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300Os.47372.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52210.1.S1_at--175--4831Chr04:27212837..27212861 (25 bp)
GCTCAGCTAAATAAACTACCCCAAG
LOC_Os04g46300
Os.52210.1.S1_at--786--1991Chr04:27212823..27212847 (25 bp)
ACTACCCCAAGACATCAGGAACCTG
LOC_Os04g46300
Os.52210.1.S1_at--1109--9611Chr04:27212712..27212736 (25 bp)
TCATGAGTCTGAGCACACAATAGTA
LOC_Os04g46300
Os.52210.1.S1_at--328--3311Chr04:27212626..27212650 (25 bp)
CACTATTGGAAAGTAGGCCCTTCAT
LOC_Os04g46300
Os.52210.1.S1_at--1049--4951Chr04:27212589..27212613 (25 bp)
GCATAATGTAAAGTCCCAAGCTGAA
LOC_Os04g46300
Os.52210.1.S1_at--700--3471Chr04:27212533..27212557 (25 bp)
CAGGTGTTCTACATATATGACCAAC
LOC_Os04g46300
Os.52210.1.S1_at--145--10131Chr04:27212518..27212542 (25 bp)
TATGACCAACACTGACTTGCGGGCA
LOC_Os04g46300
Os.52210.1.S1_at--540--9771Chr04:27212480..27212504 (25 bp)
TAAGGCAGGCTCCTTCAGTTGTCAA
LOC_Os04g46300
Os.52210.1.S1_at--938--1231Chr04:27212464..27212488 (25 bp)
AGTTGTCAACAGTCTTAGCCTTTTA
LOC_Os04g46300
Os.52210.1.S1_at--367--6971Chr04:27212337..27212361 (25 bp)
GTAGCCTTTGTATTTCTAGCAATTG
LOC_Os04g46300
Os.52210.1.S1_at--130--3191Chr04:27212318..27212342 (25 bp)
CAATTGCAATGGCTTTCTTTTATTT
LOC_Os04g46300
Target Sequence 
GCTCAGCTAAATAAACTACCCCAAGACATCAGGAACCTGGTAAATCTTGAAACCATGGATCTTTTTGAAATGCCAAGTGA
GATAATACAGAATATACAGAACAATGAGATATTACAGGAACATAATCATGAGTCTGAGCACACAATAGTAATCAAGAACA
TCCGTTGGAATAATGGGAAATTGTTGGAGGAAAAAGTTTATATCAACCTATCACTATTGGAAAGTAGGCCCTTCATAGAT
AAAGAGCAGCATAATGTAAAGTCCCAAGCTGAAATTACTGCAGGTAGAACACACAATGAATGATCAGGTGTTCTACATAT
ATGACCAACACTGACTTGCGGGCAGTTTATATAAGCATAAGGCAGGCTCCTTCAGTTGTCAACAGTCTTAGCCTTTTAAG
AGTAGAGCTTGGTGCAGCTGATGTGGTTCAGTGAGTAAATTTGAATGGAGACACCTATTCTATGATGGATTTTAATTTAC
CCTCTATTTTCGTGCCTTTAGTAGCCTTTGTATTTCTAGCAATTGCAATGGCTTTCTTTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis