Browse Element(s) Details


OsAffx.14296.1.S1_at

Description tigr:9632.m04461
TID=OsAffx.14296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4631011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46270OsAffx.26483.1.S1_x_at11/114+27201122..27203297hypothetical protein
LOC_Os04g46270OsAffx.22651.1.S1_x_at3/114+27201122..27203297hypothetical protein
LOC_Os04g46270Os.49487.1.S1_at1/114+27201122..27203297hypothetical protein
LOC_Os04g46280Os.14384.1.S1_at11/114+27204350..27207121Nudix hydrolase 8, putative, expressed
LOC_Os04g46290Os.9806.1.S1_at11/114+27207659..27210781UPF0326 protein hag1, putative, expressed
LOC_Os04g46300Os.52210.1.S1_at11/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300OsAffx.32256.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300Os.47372.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14296.1.S1_at--615--7631Chr04:27239711..27239735 (25 bp)
GGGACTAAGCACTATGCTCGCAGCT
LOC_Os04g46310
OsAffx.14296.1.S1_at--231--8131Chr04:27239712..27239736 (25 bp)
GGACTAAGCACTATGCTCGCAGCTC
LOC_Os04g46310
OsAffx.14296.1.S1_at--483--5711Chr04:27239713..27239737 (25 bp)
GACTAAGCACTATGCTCGCAGCTCA
LOC_Os04g46310
OsAffx.14296.1.S1_at--874--2011Chr04:27239714..27239738 (25 bp)
ACTAAGCACTATGCTCGCAGCTCAT
LOC_Os04g46310
OsAffx.14296.1.S1_at--79--9111Chr04:27239725..27239749 (25 bp)
TGCTCGCAGCTCATTCTTTTTAGAT
LOC_Os04g46310
OsAffx.14296.1.S1_at--48--4811Chr04:27239726..27239750 (25 bp)
GCTCGCAGCTCATTCTTTTTAGATA
LOC_Os04g46310
OsAffx.14296.1.S1_at--986--3791Chr04:27239727..27239751 (25 bp)
CTCGCAGCTCATTCTTTTTAGATAA
LOC_Os04g46310
OsAffx.14296.1.S1_at--634--10351Chr04:27239742..27239959 (25 bp)
TTTTAGATAATGGACAAGTGCTGAT
LOC_Os04g46310
OsAffx.14296.1.S1_at--733--10031Chr04:27239745..27239962 (25 bp)
TAGATAATGGACAAGTGCTGATGAG
LOC_Os04g46310
OsAffx.14296.1.S1_at--512--9771Chr04:27239749..27239966 (25 bp)
TAATGGACAAGTGCTGATGAGGACA
LOC_Os04g46310
OsAffx.14296.1.S1_at--263--2971Chr04:27239750..27239967 (25 bp)
AATGGACAAGTGCTGATGAGGACAA
LOC_Os04g46310
Target Sequence 
GGGACTAAGCACTATGCTCGCAGCTCATTCTTTTTAGATAATGGACAAGTGCTGATGAGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis