Browse Element(s) Details


OsAffx.4106.1.S1_at

Description tigr:9632.m04464
TID=OsAffx.4106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4634011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46360OsAffx.28186.2.S1_x_at1/114+27267833..27268693hypothetical protein
LOC_Os04g46370Os.27114.1.S1_at10/114+27275382..27278873L-asparaginase, putative, expressed
LOC_Os04g46380Os.57184.1.S1_at11/114+27279015..27279649expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4106.1.S1_at--91--9291Chr04:27254290..27254314 (25 bp)
TCCGGACGGGACTCTTGCTTATTCA
LOC_Os04g46340
OsAffx.4106.1.S1_at--1043--3931Chr04:27254292..27254316 (25 bp)
CGGACGGGACTCTTGCTTATTCAAA
LOC_Os04g46340
OsAffx.4106.1.S1_at--957--5751Chr04:27254294..27254318 (25 bp)
GACGGGACTCTTGCTTATTCAAAGA
LOC_Os04g46340
OsAffx.4106.1.S1_at--351--5091Chr04:27254394..27254418 (25 bp)
GCACGCATGCATGGCCGACATGGGT
LOC_Os04g46340
OsAffx.4106.1.S1_at--329--2171Chr04:27254443..27254467 (25 bp)
ACACCGTTGACGCACTATCCCGCAA
LOC_Os04g46340
OsAffx.4106.1.S1_at--120--4652Chr08:229209..229229 (21 bp)
GCGTAGGAGAGGAGGATCCCAACAC
NONE
OsAffx.4106.1.S1_at--926--972Chr08:229209..229229 (21 bp)
AGGAGAGGAGGATCCCAACACGGAC
NONE
OsAffx.4106.1.S1_at--1138--1851Chr04:27254661..27254685 (25 bp)
ACGACGAGCACGTACCTGGCTAGCT
LOC_Os04g46340
OsAffx.4106.1.S1_at--63--5111Chr04:27254668..27254692 (25 bp)
GCACGTACCTGGCTAGCTCGTCGAG
LOC_Os04g46340
OsAffx.4106.1.S1_at--778--4012Chr04:27254671..27254695 (25 bp)
CGTACCTGGCTAGCTCGTCGAGGCA
LOC_Os04g46340
OsAffx.4106.1.S1_at--994--3911Chr04:27254676..27254700 (25 bp)
CTGGCTAGCTCGTCGAGGCAGCAGA
LOC_Os04g46340
Target Sequence 
TCCGGACGGGACTCTTGCTTATTCAAAGAGGAGCGATACCTGACCATGGACGTCCCGAGCAGCAGCAGCAGCTGCCTGTG
CAGGACACGGTGCCGCTCCAACATGCACGCATGCATGGCCGACATGGGTGGCGGCGCTGTGGCGCCCACGCCCACACCGT
TGACGCACTATCCCGCAACCGCGAGCTCCTCGCCGGTGGCGCCGGCTGTGGCACCCACGCCCGCACCATCGACGCACTGC
GCCACGACCGCGAGCCTCTCGCCGGCGGCACCGGCGCCGGCGTAGGAGAGGAGGATCCCAACACGGACACGGCGGCAGAT
GAGGAAGTAGAGCACGAAGGTGCTGCCCTCGCTGCCGTCATCGGCGCGAGCACGACGAGCACGTACCTGGCTAGCTCGTC
GAGGCAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis