Browse Element(s) Details


Os.20628.1.S1_at

Description gb:AK073555.1
DB_XREF= gi:32983578
TID=Os.20628.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046A07, full insert sequence.
FL= gb:AK073555.1 gb:AK060040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g511908/11expressed protein
LOC_Os04g463501/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51154Os.7810.1.S1_at11/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51154OsAffx.23742.1.S1_at8/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51170Os.15143.1.S1_at11/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51170Os.52395.1.S1_x_at1/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51180Os.35344.18.S1_x_at10/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180Os.35344.3.S1_x_at8/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_at7/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_x_at4/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51190Os.41901.1.S1_x_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.41901.1.S1_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.20628.1.S1_at8/111+29750433..29754868expressed protein
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20628.1.S1_at--821--3931NONE
CGGCTACTCCAGATTCTATGCAGAA
NONE
Os.20628.1.S1_at--586--4431Chr01:29754526..29754550 (25 bp)
GCCATGTTGTTTAATTGACTCCTGA
LOC_Os01g51190
Os.20628.1.S1_at--692--3951NONE
CGGTTAGTTGGCCACTGCTAAATCG
NONE
Os.20628.1.S1_at--1064--8431NONE
GGCCACTGCTAAATCGGTTTGTTCT
NONE
Os.20628.1.S1_at--538--7872Chr01:29754712..29754736 (25 bp)
GGTTTGTTCTGTTGCATGAAAGTTT
LOC_Os01g51190
Os.20628.1.S1_at--262--6851Chr01:29754749..29754773 (25 bp)
GTTTGAGGTACTGACTACTGTTATG
LOC_Os01g51190
Os.20628.1.S1_at--1083--9911Chr01:29754764..29754788 (25 bp)
TACTGTTATGCCTTTTCTCGAGCTT
LOC_Os01g51190
Os.20628.1.S1_at--755--3791Chr01:29754780..29754804 (25 bp)
CTCGAGCTTGTGTAAGTAAAGGCAT
LOC_Os01g51190
Os.20628.1.S1_at--1137--7031Chr01:29754795..29754819 (25 bp)
GTAAAGGCATTTAACAGCTCTTTGT
LOC_Os01g51190
Os.20628.1.S1_at--15--4811Chr01:29754811..29754835 (25 bp)
GCTCTTTGTTATGTTTTTACACCAG
LOC_Os01g51190
Os.20628.1.S1_at--782--5271Chr01:29754835..29754860 (25 bp)
GAATGACATCTACATAAGCAGTGTT
LOC_Os01g51190
Target Sequence 
CGGCTACTCCAGATTCTATGCAGAAGTTTTTNGAAGAGTAATGTGGAGCGTACCCACAGCATCAGGAGGCCTAGCTCAGC
GCGAGGAAAGGACCCCATCCCAAGCACANCAATCCATGCATCCACATTGCATCTGCTAACATCTCCATCGAAAGAGAAGG
CCTAGAAAAAGTTCCTGCTGGAGCAAGATTGTTTTGGCACCTCAAATGTGCCATGTTGTTTAATTGACTCCTGATGTGAA
TGTAAAGTCTAGAGTAGCATCTTTAAAGTTTGGGTTGGTGATATCGTATACTGCTTGTCTGCTCTTATTGATCTATACAG
CCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCATCTTTTCANTTCGGTTAGTTGGCCACTGCTAAATCGGTT
TGTTCTGTTGCATGAAAGTTTTTTTTTTTCTTTTGTTTGAGGTACTGACTACTGTTATGCCTTTTCTCGAGCTTGTGTAA
GTAAAGGCATTTAACAGCTCTTTGTTATGTTTTTACACCAGAATGACATCTACATAAGCAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis