Browse Element(s) Details


Os.12736.1.S1_x_at

Description gb:AK061091.1
DB_XREF= gi:32971109
TID=Os.12736.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) lysine decarboxylase-like protein (P0510F09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H04, full insert sequence.
FL= gb:AK099170.1 gb:AK061091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5121011/11lysine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51170Os.15143.1.S1_at11/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51170Os.52395.1.S1_x_at1/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51180Os.35344.18.S1_x_at10/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180Os.35344.3.S1_x_at8/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_at7/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_x_at4/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51190Os.41901.1.S1_x_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.41901.1.S1_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.20628.1.S1_at8/111+29750433..29754868expressed protein
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12736.1.S1_x_at--74--10491Chr01:29764784..29764808 (25 bp)
TTACTATGATCCGTTGCTTGCGCTA
LOC_Os01g51210
Os.12736.1.S1_x_at--359--2191Chr01:29764715..29764739 (25 bp)
ACAAATAATTGTTTCGGCACCGACT
LOC_Os01g51210
Os.12736.1.S1_x_at--445--4231Chr01:29764696..29764720 (25 bp)
CCGACTGCGCATGAGCTGCTGAGAA
LOC_Os01g51210
Os.12736.1.S1_x_at--129--3091Chr01:29764545..29764569 (25 bp)
AATACACTCGTTCACACCAGGAGGT
LOC_Os01g51210
Os.12736.1.S1_x_at--252--1031Chr01:29764524..29764548 (25 bp)
AGGTAGCGCCACGTACAAGCTGGGA
LOC_Os01g51210
Os.12736.1.S1_x_at--1035--5951Chr01:29764424..29764448 (25 bp)
GAGAATTGCAGCTGCTCCTTTTATC
LOC_Os01g51210
Os.12736.1.S1_x_at--66--10471Chr01:29764388..29764412 (25 bp)
TTACCTTATCGTGTTACCTGTCCAG
LOC_Os01g51210
Os.12736.1.S1_x_at--135--8711Chr01:29764370..29764394 (25 bp)
TGTCCAGTCAACTTCATCCGGTGAA
LOC_Os01g51210
Os.12736.1.S1_x_at--75--7251Chr01:29764279..29764303 (25 bp)
GTCCGTATAATATTTCCTGCCTTAC
LOC_Os01g51210
Os.12736.1.S1_x_at--739--7471Chr01:29764222..29764246 (25 bp)
GTGTGTTTTCTCCTTGCAAATTCTA
LOC_Os01g51210
Os.12736.1.S1_x_at--197--8171Chr01:29764152..29764176 (25 bp)
GGAACACTTCTTATATGCATAGGCT
LOC_Os01g51210
Target Sequence 
TTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTG
TTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACA
AGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCNAATGTGACATTGTTCCTG
AAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTG
AAGAAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCCGTATAATA
TTTCCTGCCTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAATTCTATGCAAAATTC
GATTGGGTCTTGTAAATCTGCAGATGTAATGCAAGGGAACACTTCTTATATGCATAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12736.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis