Browse Element(s) Details


OsAffx.11557.1.S1_at

Description tigr:9629.m04964
TID=OsAffx.11557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5124011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51260Os.38391.2.S1_at11/111+29796437..29798347Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g51270NANA1+29802387..29802680hypothetical protein
LOC_Os01g51280Os.46757.1.S1_s_at11/111+29805955..29809697Survival protein SurE containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11557.1.S1_at--170--911Chr01:29781532..29781556 (25 bp)
AGGCGGCGGTCCCAACACCGAGCAT
LOC_Os01g51240
OsAffx.11557.1.S1_at--1017--2471Chr01:29781545..29781569 (25 bp)
AACACCGAGCATGGCGACGTGCGTG
LOC_Os01g51240
OsAffx.11557.1.S1_at--584--1791Chr01:29781548..29781572 (25 bp)
ACCGAGCATGGCGACGTGCGTGAAA
LOC_Os01g51240
OsAffx.11557.1.S1_at--1051--4991Chr01:29781553..29781577 (25 bp)
GCATGGCGACGTGCGTGAAAGCATT
LOC_Os01g51240
OsAffx.11557.1.S1_at--313--8391Chr01:29781557..29781581 (25 bp)
GGCGACGTGCGTGAAAGCATTCGAT
LOC_Os01g51240
OsAffx.11557.1.S1_at--964--1531Chr01:29781572..29781596 (25 bp)
AGCATTCGATGATAGCAGCGGCCCT
LOC_Os01g51240
OsAffx.11557.1.S1_at--200--9391Chr01:29781577..29781601 (25 bp)
TCGATGATAGCAGCGGCCCTCGCGA
LOC_Os01g51240
OsAffx.11557.1.S1_at--689--10011Chr01:29781584..29781608 (25 bp)
TAGCAGCGGCCCTCGCGAGCGGATC
LOC_Os01g51240
OsAffx.11557.1.S1_at--876--8051Chr01:29781616..29781640 (25 bp)
GGAGACGGCCCTTGAGGTTGGATTC
LOC_Os01g51240
OsAffx.11557.1.S1_at--534--7791Chr01:29781653..29781677 (25 bp)
GGTCCTCGCGGCTGGATTCAGTGGT
LOC_Os01g51240
OsAffx.11557.1.S1_at--861--6171Chr01:29781685..29781709 (25 bp)
GAGGAGTAACGACGACAGCGACGCG
LOC_Os01g51240
Target Sequence 
AGGCGGCGGTCCCAACACCGAGCATGGCGACGTGCGTGAAAGCATTCGATGATAGCAGCGGCCCTCGCGAGCGGATCCGG
CGGTGGAGACGGCCCTTGAGGTTGGATTCGACGGTGGTGGCGGTCCTCGCGGCTGGATTCAGTGGTGGCGTGGGAGGAGT
AACGACGACAGCGACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis