Browse Element(s) Details


Os.11642.1.S1_at

Description gb:CB680613
DB_XREF= gi:29684338
DB_XREF=OSJNEf05K16.f
CLONE=OSJNEf05K16
TID=Os.11642.1
CNT=15
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative casein kinase I (P0510F09.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5120011/11Casein kinase I, epsilon isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51154Os.7810.1.S1_at11/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51154OsAffx.23742.1.S1_at8/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51170Os.15143.1.S1_at11/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51170Os.52395.1.S1_x_at1/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51180Os.35344.18.S1_x_at10/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180Os.35344.3.S1_x_at8/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_at7/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_x_at4/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51190Os.41901.1.S1_x_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.41901.1.S1_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.20628.1.S1_at8/111+29750433..29754868expressed protein
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004680molecular_functioncasein kinase activity
GO:0004681molecular_functioncasein kinase I activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11642.1.S1_at--944--8051Chr01:29762713..29762737 (25 bp)
GGAGAACCTCTGGTCCCCAGAAAAG
LOC_Os01g51200
Os.11642.1.S1_at--798--2351Chr01:29762734..29762758 (25 bp)
AAAGCTCACCAGTCAATTCGGCAGA
LOC_Os01g51200
Os.11642.1.S1_at--385--5431Chr01:29762757..29762781 (25 bp)
GAACCAAAGCATTCATCTTCTGCCC
LOC_Os01g51200
Os.11642.1.S1_at--195--9171Chr01:29762777..29762801 (25 bp)
TGCCCGACACTCATCTAACGTTAAG
LOC_Os01g51200
Os.11642.1.S1_at--607--5211Chr01:29762801..29762825 (25 bp)
GAATTACGAGTCTGCCCTCAAAGGT
LOC_Os01g51200
Os.11642.1.S1_at--554--8171Chr01:29762878..29762902 (25 bp)
GGAACATCTACATGTGCTCTGTAAA
LOC_Os01g51200
Os.11642.1.S1_at--616--691Chr01:29762918..29762942 (25 bp)
ATGAGCACAGCATCTCCTGTTGAGT
LOC_Os01g51200
Os.11642.1.S1_at--214--6291Chr01:29762988..29763012 (25 bp)
GATGATGGTCCTCTGGACACGGTAA
LOC_Os01g51200
Os.11642.1.S1_at--788--191Chr01:29763132..29763156 (25 bp)
ATTTCTATTCCTTCCAGTACCATGT
LOC_Os01g51200
Os.11642.1.S1_at--4--9991Chr01:29763149..29763173 (25 bp)
TACCATGTCCAGATACTATGTCTCG
LOC_Os01g51200
Os.11642.1.S1_at--841--3691Chr01:29763164..29763188 (25 bp)
CTATGTCTCGGTATAGCCAAGTGCC
LOC_Os01g51200
Target Sequence 
GGAGAACCTCTGGTCCCCAGAAAAGCTCACCAGTCAATTCGGCAGAACCAAAGCATTCATCTTCTGCCCGACACTCATCT
AACGTTAAGAATTACGAGTCTGCCCTCAAAGGTATTGAAGGTCTTAATTTTGACGGGGATGAGAGGGTTCAGTACTAGCA
ATGAAGGAACATCTACATGTGCTCTGTAAAAATCATAATCTGTAGATGAGCACAGCATCTCCTGTTGAGTTTTGTATCAC
AGGATATGTTAGGAGGATGTGAAGTGCTTTTGCCAGATGATGGTCCTCTGGACACGGTAAATAAGCGGTCAGCCTGAGGT
GCCTGAAATTTAGCTCTTATAATTAATGTGACGGTTCTGTAAATGTCTTTATTATTCGTTTGCTGGGGCCTCTCTAGTTC
ATTGGTCAGCTGTATCCCCATTTCTATTCCTTCCAGTACCATGTCCAGATACTATGTCTCGGTATAGCCAAGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis