Browse Element(s) Details


Os.7810.1.S1_at

Description gb:BX901219
DB_XREF= gi:40490844
DB_XREF=BX901219
CLONE=p461h01p3
TID=Os.7810.1
CNT=29
FEA=mRNA
TIER=Stack
STK=6
UG=Os.7810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) histone H1-like protein (P0510F09.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5115411/11Single myb histone 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51140Os.25546.1.S1_at11/111+29709555..29712493Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g51140Os.32078.1.S1_at11/111+29709555..29712493Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g51154Os.7810.1.S1_at11/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51154OsAffx.23742.1.S1_at8/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51170Os.15143.1.S1_at11/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51170Os.52395.1.S1_x_at1/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51180Os.35344.18.S1_x_at10/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180Os.35344.3.S1_x_at8/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_at7/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_x_at4/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51190Os.41901.1.S1_x_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.41901.1.S1_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.20628.1.S1_at8/111+29750433..29754868expressed protein
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7810.1.S1_at--1087--5291Chr01:29737517..29737541 (25 bp)
GAAGGATCCAGCCAAGCCACTGAAG
LOC_Os01g51154
Os.7810.1.S1_at--302--10051Chr01:29737555..29737579 (25 bp)
TAGGTTCATTTGCTGGTACGAGTCC
LOC_Os01g51154
Os.7810.1.S1_at--708--7991Chr01:29737625..29737649 (25 bp)
GGAGGCCAAATCACACCTTGCGAAT
LOC_Os01g51154
Os.7810.1.S1_at--113--9011Chr01:29737867..29737891 (25 bp)
TGAATTCCAATCTGTTAGCGGCAAC
LOC_Os01g51154
Os.7810.1.S1_at--726--8231Chr01:29737898..29737922 (25 bp)
GGCACTGGTTCTACTGTACTTGCAT
LOC_Os01g51154
Os.7810.1.S1_at--285--10731Chr01:29737917..29737941 (25 bp)
TTGCATAGGTTGGTTTGCCCTGTCA
LOC_Os01g51154
Os.7810.1.S1_at--837--4991Chr01:29737948..29737972 (25 bp)
GCATGTTGTTCCTCCGATGTGTAAC
LOC_Os01g51154
Os.7810.1.S1_at--871--10051Chr01:29737995..29738019 (25 bp)
TATGTACTTGGGTCGAGCCGGCTAA
LOC_Os01g51154
Os.7810.1.S1_at--712--5851Chr01:29738009..29738033 (25 bp)
GAGCCGGCTAAGACGTTTACCTCAA
LOC_Os01g51154
Os.7810.1.S1_at--462--3231Chr01:29738031..29738055 (25 bp)
CAAAAACGTCAGGTGTTCCGCTCAT
LOC_Os01g51154
Os.7810.1.S1_at--973--7411Chr01:29738043..29738067 (25 bp)
GTGTTCCGCTCATCCTTAATTATAA
LOC_Os01g51154
Target Sequence 
GAAGGATCCAGCCAAGCCACTGAAGGCATCGCAGAATTTAGGTTCATTTGCTGGTACGAGTCCTGCCCTAGAAGCAGCTG
CNGCTGCAGCTATGAAAGTGGCTGATGCGGAGGCCAAATCACACCTTGCGAATGAGCACATGACGGAGGCTGAAAGGATC
TTCAAGCTTGCTGAGGAGACCGAGTCTCTCGTTACACTCGCAACAGAGATCTATGAACGATGTTCAAGAGGAGAGATATT
AACAATAATGCAAGTGGCGCAAAGCAATTTTGAATTCCAATCTGTTAGCGGCAACGGCAGCGGCACTGGTTCTACTGTAC
TTGCATAGGTTGGTTTGCCCTGTCATCTTTGGCATGTTGTTCCTCCGATGTGTAACTTAAAACATGTTGTTAACTTGTTA
TGTACTTGGGTCGAGCCGGCTAAGACGTTTACCTCAAAAACGTCAGGTGTTCCGCTCATCCTTAATTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis