Browse Element(s) Details


Os.1576.1.S1_at

Description gb:AK103875.1
DB_XREF= gi:32989084
TID=Os.1576.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456F08.2 (P0456F08.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149M12, full insert sequence.
FL= gb:AK103875.1 gb:AK102451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5123010/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51180Os.35344.18.S1_x_at10/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180Os.35344.3.S1_x_at8/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_at7/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_x_at4/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51190Os.41901.1.S1_x_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.41901.1.S1_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.20628.1.S1_at8/111+29750433..29754868expressed protein
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51260Os.38391.2.S1_at11/111+29796437..29798347Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1576.1.S1_at--460--10311Chr01:29775404..29775428 (25 bp)
TTTCGTGTGCGATGAGAGCTCCCCA
LOC_Os01g51230
Os.1576.1.S1_at--76--7531Chr01:29775303..29775327 (25 bp)
GTGGACCGAGCTACATGAGCCTGAC
LOC_Os01g51230
Os.1576.1.S1_at--871--2931Chr01:29775263..29775287 (25 bp)
AAGGCTGAGTGGCTATGGCTCTCAC
LOC_Os01g51230
Os.1576.1.S1_at--957--2291Chr01:29775225..29775249 (25 bp)
AAAGGCAAAGGTCCGGTGATCTCCT
LOC_Os01g51230
Os.1576.1.S1_at--521--8291Chr01:29775182..29775206 (25 bp)
GGCATTCTCTTCCATAGATGTTCAG
LOC_Os01g51230
Os.1576.1.S1_at--164--8331Chr01:29775148..29775172 (25 bp)
GGCTCGGAGGTCTCAGTAACTTCAA
LOC_Os01g51230
Os.1576.1.S1_at--510--691Chr01:29775066..29775090 (25 bp)
ATGAGAGACGGCCTAGTTCCTTGCT
LOC_Os01g51230
Os.1576.1.S1_at--721--991Chr01:29775039..29775063 (25 bp)
AGGATACGCACCCTAATTGGTCCCT
LOC_Os01g51230
Os.1576.1.S1_at--280--4271Chr01:29774981..29775005 (25 bp)
CCTGTACGTATCTGCTGGTTTCAAT
LOC_Os01g51230
Os.1576.1.S1_at--259--5471Chr01:29774894..29774918 (25 bp)
GAACTGTTATGTCGATCTGCTGCAT
LOC_Os01g51230
Os.1576.1.S1_at--814--3051Chr01:29774864..29774888 (25 bp)
AATCTTGGGCTTGCAAACTTCTGAA
NONE
Target Sequence 
TTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAA
GATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGC
TCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGA
TGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAA
GAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTT
TAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTAT
GGTGTACAAATGTGAAACTCCACAAANTGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAATCTTGGGCTTGCAAACT
TCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis