Browse Element(s) Details


Os.1577.2.S1_x_at

Description gb:NM_191686.1
DB_XREF= gi:34910455
GEN=P0456F08.3
TID=Os.1577.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456F08.3 (P0456F08.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0456F08.3 (P0456F08.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5125010/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51260Os.38391.2.S1_at11/111+29796437..29798347Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g51270NANA1+29802387..29802680hypothetical protein
LOC_Os01g51280Os.46757.1.S1_s_at11/111+29805955..29809697Survival protein SurE containing protein, expressed
LOC_Os01g51290Os.25899.1.S1_a_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51290Os.25899.2.S1_s_at11/111+29810069..29819366Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1577.2.S1_x_at--707--4791Chr01:29785924..29785948 (25 bp)
GCTCGAGCGCCTCAAGATATTGCTA
LOC_Os01g51250
Os.1577.2.S1_x_at--663--1131Chr01:29787946..29787970 (25 bp)
AGTGCGAGCTCTCTATCGTGGAGTA
LOC_Os01g51250
Os.1577.2.S1_x_at--1140--6071Chr01:29788149..29788169 (21 bp)
GAGTAGGTCCAACGCTCATGGGAAT
LOC_Os01g51250
Os.1577.2.S1_x_at--1092--9871Chr01:29788169..29788193 (25 bp)
TACTTCCTTATGCTGGTCTTAAATT
LOC_Os01g51250
Os.1577.2.S1_x_at--1014--4711Chr01:29788276..29788300 (25 bp)
GCTGGATTATTTGGGCAGACTCTAA
LOC_Os01g51250
Os.1577.2.S1_x_at--1054--3411Chr01:29788291..29788315 (25 bp)
CAGACTCTAACTTACCCACTAGATG
LOC_Os01g51250
Os.1577.2.S1_x_at--70--3191Chr01:29788544..29788568 (25 bp)
CAATTGTTTGCTGGCTTGAGCCTCA
LOC_Os01g51250
Os.1577.2.S1_x_at--500--131NONE
ATTACATCAAGGTGGTACCCTCTGT
NONE
Os.1577.2.S1_x_at--965--9951Chr01:29789341..29789365 (25 bp)
TACCCTCTGTGGCTATTGGTTTTAC
LOC_Os01g51250
Os.1577.2.S1_x_at--991--7871Chr01:29789358..29789382 (25 bp)
GGTTTTACCGCATATGACACGATGA
LOC_Os01g51250
Os.1577.2.S1_x_at--348--6071Chr01:29789384..29789408 (25 bp)
GAGTTTACTGAAGATACCTCCCAGA
LOC_Os01g51250
Target Sequence 
GCTCGAGCGCCTCAAGATATTGCTACAGGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAAC
CAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGT
CCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGA
TTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAG
ATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACATTC
CAAGGTCTTATGATCATCAAACAAACGCAGGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGT
ACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1577.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis