Browse Element(s) Details


Os.25899.2.S1_s_at

Description gb:AK066986.1
DB_XREF= gi:32977004
TID=Os.25899.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (P0456F08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093M03, full insert sequence.
FL= gb:AK066986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5129011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51260Os.38391.2.S1_at11/111+29796437..29798347Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g51270NANA1+29802387..29802680hypothetical protein
LOC_Os01g51280Os.46757.1.S1_s_at11/111+29805955..29809697Survival protein SurE containing protein, expressed
LOC_Os01g51290Os.25899.1.S1_a_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51290Os.25899.2.S1_s_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51300Os.12711.1.S1_at11/111+29827969..29833800WD-40 repeat protein MSI4, putative, expressed
LOC_Os01g51310OsAffx.23744.1.S1_s_at11/111+29835190..29836268expressed protein
LOC_Os01g51320Os.41896.1.S1_x_at9/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51320Os.41896.1.S1_at8/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25899.2.S1_s_at--156--5231Chr01:29817667..29817691 (25 bp)
GAATATTGTACTTCATCCGTCACAG
LOC_Os01g51290
Os.25899.2.S1_s_at--590--751Chr01:29817506..29817530 (25 bp)
ATGTAAAACCACCTGCAGCAACTAG
LOC_Os01g51290
Os.25899.2.S1_s_at--953--8151Chr01:29817460..29817484 (25 bp)
GGAACTATATGCACCAAGCCCAACG
LOC_Os01g51290
Os.25899.2.S1_s_at--674--831Chr01:29815333..29815357 (25 bp)
ATGGAGTTCCAATTGCAGCACATTC
LOC_Os01g51290
Os.25899.2.S1_s_at--913--911Chr01:29815301..29815325 (25 bp)
AGGCATCATCATTCCATGCTTGTAA
LOC_Os01g51290
Os.25899.2.S1_s_at--418--5591Chr01:29815264..29815288 (25 bp)
GAAATACCCATGCAGGTCCAGTTGT
LOC_Os01g51290
Os.25899.2.S1_s_at--369--9211Chr01:29815248..29815272 (25 bp)
TCCAGTTGTGGCACCTCCAAAGGGA
LOC_Os01g51290
Os.25899.2.S1_s_at--1148--3551Chr01:29815220..29815244 (25 bp)
CATCACCATTCTTTGCCTGTAAATA
LOC_Os01g51290
Os.25899.2.S1_s_at--929--10211Chr01:29815095..29815119 (25 bp)
TATTCTCCTTCAAATTCTCCCAGTA
LOC_Os01g51290
Os.25899.2.S1_s_at--684--3111Chr01:29815017..29815041 (25 bp)
AATTTACCACCTTCACATCATAGGC
LOC_Os01g51290
Os.25899.2.S1_s_at--998--271Chr01:29814998..29815022 (25 bp)
ATAGGCCCCACAAAGGTATGCTGAC
LOC_Os01g51290
Target Sequence 
GAATATTGTACTTCATCCGTCACAGTTACAAACCCCAAGACTCCAAAGCTTAGGACTAAATGTAAAACCACCTGCAGCAA
CTAGCAGACGTGTTAACGTACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAGGTCTTGCTATTCCTCCA
CTTCCAACAACTTCACCCCCAGTTTTCCCACCTCCCATCAGATCTTATCCTCCACTTCCTGCAAATAGGCCATACCCCAA
TAGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGCCCATGGAGTTCCAATTGCAGCACATT
CAAAAGAAAGGCATCATCATTCCATGCTTGTAAATAATACACATGGAAATACCCATGCAGGTCCAGTTGTGGCACCTCCA
AAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGGACCTGCCTATTCTCCTTCAAATTCTCCCAG
TATCCATAGAAAACATGGCATTCCAGTTGCTGCACCTCCAAAGCAACATTCCAGCAATTTACCACCTTCACATCATAGGC
CCCACAAAGGTATGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25899.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis