Browse Element(s) Details


OsAffx.23744.1.S1_s_at

Description tigr:9629.m04972
TID=OsAffx.23744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5131011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51290Os.25899.1.S1_a_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51290Os.25899.2.S1_s_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51300Os.12711.1.S1_at11/111+29827969..29833800WD-40 repeat protein MSI4, putative, expressed
LOC_Os01g51310OsAffx.23744.1.S1_s_at11/111+29835190..29836268expressed protein
LOC_Os01g51320Os.41896.1.S1_x_at9/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51320Os.41896.1.S1_at8/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51330Os.45952.1.S1_at11/111+29848452..29849826expressed protein
LOC_Os01g51340NANA1+29852028..29853377Zinc knuckle family protein
LOC_Os01g51360Os.19771.1.S1_at11/111+29856574..29859612Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23744.1.S1_s_at--132--9711Chr01:29835977..29836001 (25 bp)
TCAACCGCGGCACGTAGCTCGATCG
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--177--4811Chr01:29836049..29836073 (25 bp)
GCTCGGCGACCCATGCGTTTAGAGT
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--963--9451Chr01:29836051..29836075 (25 bp)
TCGGCGACCCATGCGTTTAGAGTGG
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--115--4091Chr01:29836055..29836079 (25 bp)
CGACCCATGCGTTTAGAGTGGTCAC
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--160--10271Chr01:29836129..29836153 (25 bp)
TTTGAAGTTCATTTATCTCGTGTAT
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--97--191Chr01:29836139..29836163 (25 bp)
ATTTATCTCGTGTATGTTCGACTCA
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--846--451Chr01:29836143..29836167 (25 bp)
ATCTCGTGTATGTTCGACTCAGGTA
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--157--8751Chr01:29836149..29836173 (25 bp)
TGTATGTTCGACTCAGGTAGTACTC
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--417--3191Chr01:29836160..29836184 (25 bp)
CTCAGGTAGTACTCGAATTTGCCCG
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--1041--6911Chr01:29836165..29836189 (25 bp)
GTAGTACTCGAATTTGCCCGACTCG
LOC_Os01g51310
OsAffx.23744.1.S1_s_at--828--6971Chr01:29836168..29836192 (25 bp)
GTACTCGAATTTGCCCGACTCGAGA
LOC_Os01g51310
Target Sequence 
TCAACCGCGGCACGTAGCTCGATCGCGCGCGCGCGCTCTCAAACCGCGGCGCCGGTGCAGATGCAAAAGGCGGCTCGGCG
ACCCATGCGTTTAGAGTGGTCACTGTGTACGCGTTGTTTGTAAACGGCAATTAGTTTTCAATTTTGGGTGTTTTTGAAGT
TCATTTATCTCGTGTATGTTCGACTCAGGTAGTACTCGAATTTGCCCGACTCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23744.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis