Browse Element(s) Details


Os.19771.1.S1_at

Description gb:AK104373.1
DB_XREF= gi:32989582
TID=Os.19771.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.19771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipase (P0456F08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F02, full insert sequence.
FL= gb:AK104373.1 gb:AK106129.1 gb:AK098952.1 gb:AK069577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5136011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51300Os.12711.1.S1_at11/111+29827969..29833800WD-40 repeat protein MSI4, putative, expressed
LOC_Os01g51310OsAffx.23744.1.S1_s_at11/111+29835190..29836268expressed protein
LOC_Os01g51320Os.41896.1.S1_x_at9/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51320Os.41896.1.S1_at8/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51330Os.45952.1.S1_at11/111+29848452..29849826expressed protein
LOC_Os01g51340NANA1+29852028..29853377Zinc knuckle family protein
LOC_Os01g51360Os.19771.1.S1_at11/111+29856574..29859612Lipase family protein, expressed
LOC_Os01g51370Os.52929.1.S1_x_at8/111+29861811..29862986expressed protein
LOC_Os01g51380Os.1592.1.S1_at11/111+29863554..29869256Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os01g51390Os.4124.1.S1_a_at11/111+29871535..29875363Insulinase containing protein, expressed
LOC_Os01g51400Os.31634.1.S1_at11/111+29878513..29880843Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19771.1.S1_at--911--951Chr01:29858360..29858384 (25 bp)
AGGACAGCAACCTTGTGCCGGAGTC
LOC_Os01g51360
Os.19771.1.S1_at--819--2871Chr01:29858159..29858183 (25 bp)
AAGGGTCTAAGCTTCTGTCTGGATT
LOC_Os01g51360
Os.19771.1.S1_at--352--3871Chr01:29857029..29857053 (25 bp)
CTGATACATGTAAAGCCGGAGCTGC
LOC_Os01g51360
Os.19771.1.S1_at--225--5891Chr01:29857011..29857035 (25 bp)
GAGCTGCGTGAGTTGTTGAAGACCA
LOC_Os01g51360
Os.19771.1.S1_at--935--4671Chr01:29856966..29856990 (25 bp)
GCGGTGGCGTCGAACTGATATGCTT
LOC_Os01g51360
Os.19771.1.S1_at--530--7631Chr01:29856916..29856940 (25 bp)
GGGAGCGAGCTAGATTACAACAATG
LOC_Os01g51360
Os.19771.1.S1_at--342--10391Chr01:29856833..29856857 (25 bp)
TTTTCCTTTCTGCTTTTAGTGTCTC
LOC_Os01g51360
Os.19771.1.S1_at--930--691Chr01:29856793..29856817 (25 bp)
ATGAGTCCTGGCATCATAAGTAGGT
LOC_Os01g51360
Os.19771.1.S1_at--376--7871Chr01:29856767..29856791 (25 bp)
GGTTAGTCGACTAGGTTCGAGCCTC
LOC_Os01g51360
Os.19771.1.S1_at--567--4451Chr01:29856747..29856771 (25 bp)
GCCTCACCACATCTCAATAAATATC
LOC_Os01g51360
Os.19771.1.S1_at--237--2251Chr01:29856729..29856753 (25 bp)
AAATATCGATATGTGACCCCTCCTT
LOC_Os01g51360
Target Sequence 
AGGACAGCAACCTTGTGCCGGAGTCATGGTGGGTGGAGAGGAACAAAGGCATGGTGCTCGGCCAGAACGGGGAATGGCAG
CTCGAGGGGCCCGCAGAGGAGAACCTGCCCGTGCCACCGGTGGTGACCGGGAAGATCATCGACGACGACGTCGCTGCCGT
GGCCACCTCCAGCAGTGCCAAGGAGGATAAGAAGACGGGCAAAGGGTCTAAGCTTCTGTCTGGATTGATTGATCAACTGC
TTTGTGTGCCTGATACATGTAAAGCCGGAGCTGCGTGAGTTGTTGAAGACCACATCAGAAAAAGACTCGAGAGCGGTGGC
GTCGAACTGATATGCTTGTGAAGTAGCTGGAGCTTGGGAGTTGGGAGCGAGCTAGATTACAACAATGTCATTTATCGGTT
TTTCTTTGGAATAAAATGAGTTGTTTTGTTAGGAGAAAGTAGTATTTTTCCTTTCTGCTTTTAGTGTCTCTTGAGAAAGA
ATAAAATGAGTCCTGGCATCATAAGTAGGTGGGTTAGTCGACTAGGTTCGAGCCTCACCACATCTCAATAAATATCGATA
TGTGACCCCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis