Browse Element(s) Details


Os.31634.1.S1_at

Description gb:AK107001.1
DB_XREF= gi:32992210
TID=Os.31634.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (P0456F08.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C06, full insert sequence.
FL= gb:AK107001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5140011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51360Os.19771.1.S1_at11/111+29856574..29859612Lipase family protein, expressed
LOC_Os01g51370Os.52929.1.S1_x_at8/111+29861811..29862986expressed protein
LOC_Os01g51380Os.1592.1.S1_at11/111+29863554..29869256Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os01g51390Os.4124.1.S1_a_at11/111+29871535..29875363Insulinase containing protein, expressed
LOC_Os01g51400Os.31634.1.S1_at11/111+29878513..29880843Leucine Rich Repeat family protein, expressed
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31634.1.S1_at--463--3411Chr01:29880280..29880304 (25 bp)
CAGAAGCAGGACGTGCACGCGTTCG
LOC_Os01g51400
Os.31634.1.S1_at--251--7811Chr01:29880306..29880330 (25 bp)
GGTCGTCCTGCTTGAGATCCTGACG
LOC_Os01g51400
Os.31634.1.S1_at--922--2791Chr01:29880535..29880559 (25 bp)
AAGATGATCGAGGACATCAGGGACA
LOC_Os01g51400
Os.31634.1.S1_at--1128--6171Chr01:29880637..29880661 (25 bp)
GAGGACACCACTAGGTCCACCAATG
LOC_Os01g51400
Os.31634.1.S1_at--764--7491Chr01:29880680..29880704 (25 bp)
GTGGTGACAGTTTCCAGCTTTCCTT
LOC_Os01g51400
Os.31634.1.S1_at--215--8811Chr01:29880723..29880747 (25 bp)
TGTTGTTAACAAGAGGTGCTGCCGT
LOC_Os01g51400
Os.31634.1.S1_at--1090--7771Chr01:29880737..29880761 (25 bp)
GGTGCTGCCGTTTAGATGTTAGTTT
LOC_Os01g51400
Os.31634.1.S1_at--1075--10031Chr01:29880749..29880773 (25 bp)
TAGATGTTAGTTTTCTGCCATCATG
LOC_Os01g51400
Os.31634.1.S1_at--841--4431Chr01:29880765..29880789 (25 bp)
GCCATCATGATTCTGTGGCATGTGA
LOC_Os01g51400
Os.31634.1.S1_at--244--5671Chr01:29880788..29880812 (25 bp)
GACATGTCAGGTACCTGTGATCAAT
LOC_Os01g51400
Os.31634.1.S1_at--175--8531Chr01:29880812..29880836 (25 bp)
TGGAAATTATCAACTCCTTTTGTTT
LOC_Os01g51400
Target Sequence 
CAGAAGCAGGACGTGCACGCGTTCGGGGTCGTCCTGCTTGAGATCCTGACGGGGCGGTCGCCGGAGGACGGCAACGTGGA
CCTGGCGCTGTGGGCGCGCACGGTGGTGCGCGAGGAGTGGACCTCGGAGGTGTTCGACGTGGAGCTGCTGCCGAGCAGGG
GCGGCGCGGAGGACGAGATGGTGGCGCTCCTCCATGTGGCGCTGCTGTGCGTCGCCGACGACCCCGGCGAGCGGCCGAGG
ATGGCGGTGGTGGCCAAGATGATCGAGGACATCAGGGACAGGGGGAGCAAGAGGAGCAGGTACTCGGCGTCGCCGTCGCA
GGTTGGCCACTCCTACGAGTCATCCCCTTCCATCTCGGAGGACACCACTAGGTCCACCAATGCCTCAAGCTCTTGAAGCT
GTGGTGACAGTTTCCAGCTTTCCTTCCCAAAAAATCCAATGGATGTTGTTAACAAGAGGTGCTGCCGTTTAGATGTTAGT
TTTCTGCCATCATGATTCTGTGGCATGTGACATGTCAGGTACCTGTGATCAATGGAAATTATCAACTCCTTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis