Browse Element(s) Details


Os.9355.1.S1_at

Description gb:AK102444.1
DB_XREF= gi:32987653
TID=Os.9355.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative LRP(lateral root primordia) 1 (P0431G06.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093N15, full insert sequence.
FL= gb:AK102444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7249011/11lateral root primordium 1, putative, expressed
LOC_Os01g514301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72450Os.42819.1.S1_x_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72450Os.42819.1.S1_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72460Os.24906.1.S1_at10/111+42344922..42346355NADPH:quinone oxidoreductase, putative, expressed
LOC_Os01g72470Os.51382.1.S1_at11/111+42347709..42348313expressed protein
LOC_Os01g72480Os.10877.1.S1_at11/111+42352542..42354833Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g72490Os.9355.1.S1_at11/111+42364026..42366470lateral root primordium 1, putative, expressed
LOC_Os01g72500OsAffx.25007.2.S1_s_at8/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.2.S1_at7/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.1.S1_at6/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72510Os.6791.1.S1_x_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.6791.1.S1_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.46987.1.S1_x_at1/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0048479biological_processstyle development
GO:0048480biological_processstigma development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9355.1.S1_at--843--1331Chr01:42364435..42364459 (25 bp)
AGAGAAGGCGGCTCCTCCATGGTGC
LOC_Os01g72490
Os.9355.1.S1_at--685--811Chr01:42364417..42364441 (25 bp)
ATGGTGCACTCGGACTTGTACGGCG
LOC_Os01g72490
Os.9355.1.S1_at--610--9451Chr01:42364359..42364383 (25 bp)
TCGGCGGATCGAGCTATGGTAACAC
LOC_Os01g72490
Os.9355.1.S1_at--890--7831Chr01:42364342..42364366 (25 bp)
GGTAACACCATGAACTGAGCTTCTT
LOC_Os01g72490
Os.9355.1.S1_at--643--7871Chr01:42364305..42364329 (25 bp)
GGTTATTACACCAATTACTGCCATT
LOC_Os01g72490
Os.9355.1.S1_at--593--111Chr01:42364283..42364307 (25 bp)
ATTCTTTTTCTCTCGTCGTTCTTGC
LOC_Os01g72490
Os.9355.1.S1_at--645--3251Chr01:42364235..42364259 (25 bp)
CAACGCATGCTGTTTGTTCTACTAC
LOC_Os01g72490
Os.9355.1.S1_at--1129--6711Chr01:42364220..42364244 (25 bp)
GTTCTACTACTCATATCTTCGGTGG
LOC_Os01g72490
Os.9355.1.S1_at--455--9991Chr01:42364147..42364171 (25 bp)
TAGCTTGTACTACTACCTTAGCAGT
LOC_Os01g72490
Os.9355.1.S1_at--411--5032Chr01:29900475..29900497 (22 bp)
GCAGTAGCTGTTCTTTTTTCATTTT
LOC_Os01g51430
Os.9355.1.S1_at--751--171Chr01:42364107..42364131 (25 bp)
ATTTTTTCTCTTTCCATTGGAGTAG
LOC_Os01g72490
Target Sequence 
AGAGAAGGCGGCTCCTCCATGGTGCACTCGGACTTGTACGGCGGCGGCGGCGGCAGCGGCGGAGGCCCGCACATTCTCGG
CGGATCGAGCTATGGTAACACCATGAACTGAGCTTCTTATAGAAGAGTAAGGTTATTACACCAATTACTGCCATTCTTTT
TCTCTCGTCGTTCTTGCCCCGTACCACCACGAAGGGGCATCAACGCATGCTGTTTGTTCTACTACTCATATCTTCGGTGG
TGTTAGTGTTATCGTTGTTGTAGTATAATAACATCGGAGAATTGTTGTTAGCTTGTACTACTACCTTAGCAGTAGCTGTT
CTTTTTTCATTTTTTCTCTTTCCATTGGAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis