Browse Element(s) Details


Os.24906.1.S1_at

Description gb:AK062729.1
DB_XREF= gi:32972747
TID=Os.24906.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADPH:quinone oxidoreductase (P0431G06.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E03, full insert sequence.
FL= gb:AK062729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7246010/11NADPH:quinone oxidoreductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72400OsAffx.30226.2.S1_s_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_x_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.2.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.24587.1.S1_x_at3/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_at1/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72410Os.5540.3.S1_x_at11/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72410Os.5540.1.A1_at10/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72420Os.5540.2.S1_at11/111+42326677..42329626C2 domain containing protein, expressed
LOC_Os01g72430Os.26479.1.A1_a_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.2.S1_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_x_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_at10/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72440OsAffx.24014.1.S1_at11/111+42338035..42338356hypothetical protein
LOC_Os01g72450Os.42819.1.S1_x_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72450Os.42819.1.S1_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72460Os.24906.1.S1_at10/111+42344922..42346355NADPH:quinone oxidoreductase, putative, expressed
LOC_Os01g72470Os.51382.1.S1_at11/111+42347709..42348313expressed protein
LOC_Os01g72480Os.10877.1.S1_at11/111+42352542..42354833Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g72490Os.9355.1.S1_at11/111+42364026..42366470lateral root primordium 1, putative, expressed
LOC_Os01g72500OsAffx.25007.2.S1_s_at8/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.2.S1_at7/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.1.S1_at6/111+42367975..42369762retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008752molecular_functionFMN reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24906.1.S1_at--10--9651Chr01:42345840..42345863 (24 bp)
TCAGGTCCTCTGAAGAACGCGTTGG
LOC_Os01g72460
Os.24906.1.S1_at--239--8511Chr01:42345937..42345961 (25 bp)
TGGCAGCCGATCAATGTACCACATC
LOC_Os01g72460
Os.24906.1.S1_at--596--2971Chr01:42345949..42345973 (25 bp)
AATGTACCACATCAGGCAAGTCGGG
LOC_Os01g72460
Os.24906.1.S1_at--159--8131Chr01:42345982..42346006 (25 bp)
GGACATCCATTTCATCAACAAGCCT
LOC_Os01g72460
Os.24906.1.S1_at--259--7431Chr01:42346010..42346034 (25 bp)
GTGTTCATCAAAGCACATCAGCCTC
LOC_Os01g72460
Os.24906.1.S1_at--220--3751Chr01:42346088..42346112 (25 bp)
CTCAAGGATATGCTCCTGTCACTGC
LOC_Os01g72460
Os.24906.1.S1_at--686--8731Chr01:42346104..42346128 (25 bp)
TGTCACTGCAAGCTTTCGCCCTGAG
LOC_Os01g72460
Os.24906.1.S1_at--729--3751Chr01:42346150..42346174 (25 bp)
CTCTAAACATGCAGCTTAAGCGGGT
LOC_Os01g72460
Os.24906.1.S1_at--968--8131Chr01:42346218..42346242 (25 bp)
GGACAACTTATCTTAACGCCGAACA
LOC_Os01g72460
Os.24906.1.S1_at--685--7911Chr01:42346286..42346310 (25 bp)
GGTTGTGTAACTTGTTCATCTTGAT
LOC_Os01g72460
Os.24906.1.S1_at--1067--2171NONE
ACACTTTCCCTTTCTGTTCACAGAA
NONE
Target Sequence 
TCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAG
CGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTTGGACATCCATTTCATCA
ACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGGAGATT
AAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACA
TGCAGCTTAAGCGGGTTTTCAGAAAAAAAACTGGATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGA
ACAATTGTGTAGCCGTGATTTGAACGGTAGCTTAAATAAATCTTTTGGTTGTGTAACTTGTTCATCTTGATGGAATTACC
AAACCACACTTTCCCTTTCTGTTCACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis