Browse Element(s) Details


Os.42819.1.S1_at

Description gb:NM_189783.1
DB_XREF= gi:34906649
GEN=P0431G06.21
TID=Os.42819.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431G06.21 (P0431G06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0431G06.21 (P0431G06.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7245011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72390OsAffx.9670.1.S1_at11/111+42312927..42315705NB-ARC domain containing protein
LOC_Os01g72400OsAffx.30226.2.S1_s_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_x_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.2.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.24587.1.S1_x_at3/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_at1/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72410Os.5540.3.S1_x_at11/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72410Os.5540.1.A1_at10/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72420Os.5540.2.S1_at11/111+42326677..42329626C2 domain containing protein, expressed
LOC_Os01g72430Os.26479.1.A1_a_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.2.S1_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_x_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_at10/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72440OsAffx.24014.1.S1_at11/111+42338035..42338356hypothetical protein
LOC_Os01g72450Os.42819.1.S1_x_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72450Os.42819.1.S1_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72460Os.24906.1.S1_at10/111+42344922..42346355NADPH:quinone oxidoreductase, putative, expressed
LOC_Os01g72470Os.51382.1.S1_at11/111+42347709..42348313expressed protein
LOC_Os01g72480Os.10877.1.S1_at11/111+42352542..42354833Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g72490Os.9355.1.S1_at11/111+42364026..42366470lateral root primordium 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42819.1.S1_at--653--9311Chr01:42339978..42340002 (25 bp)
TCCCTGTCCGGGACGGTGCTGCCGT
LOC_Os01g72450
Os.42819.1.S1_at--246--4491Chr01:42340034..42340058 (25 bp)
GCCGTTCTCGGTGTCTCTAGCTGGG
LOC_Os01g72450
Os.42819.1.S1_at--167--8371Chr01:42340058..42340082 (25 bp)
GGCGGGCGGGCAGGTGATCGGCGGC
LOC_Os01g72450
Os.42819.1.S1_at--688--7471Chr01:42340122..42340146 (25 bp)
GTGGTGGCCGCCACGTTCGGGAGCG
LOC_Os01g72450
Os.42819.1.S1_at--403--9431Chr01:42340138..42340162 (25 bp)
TCGGGAGCGCCGAGGTGCACCGGTT
LOC_Os01g72450
Os.42819.1.S1_at--1141--1031Chr01:42340150..42340174 (25 bp)
AGGTGCACCGGTTGCCCGCTGATGA
LOC_Os01g72450
Os.42819.1.S1_at--548--4251Chr01:42340157..42340181 (25 bp)
CCGGTTGCCCGCTGATGAGGACGAC
LOC_Os01g72450
Os.42819.1.S1_at--395--6691Chr01:42340302..42340326 (25 bp)
GTTGCCGGCGGTGCGAGTGGCGGGC
LOC_Os01g72450
Os.42819.1.S1_at--1120--4211Chr01:42340360..42340384 (25 bp)
CCGAGATGGTCTTGTGGGCCCAGTC
LOC_Os01g72450
Os.42819.1.S1_at--716--1311Chr01:42340363..42340387 (25 bp)
AGATGGTCTTGTGGGCCCAGTCGCC
LOC_Os01g72450
Os.42819.1.S1_at--35--10851Chr01:42340371..42340395 (25 bp)
TTGTGGGCCCAGTCGCCAGGCTCAG
LOC_Os01g72450
Target Sequence 
TCCCTGTCCGGGACGGTGCTGCCGTCCGCGGCCGGAGAGGGGGCCGCGCCGCCGCCGCCGTTCTCGGTGTCTCTAGCTGG
GGCGGGCGGGCAGGTGATCGGCGGCACGCTCGCCGGGGAGATGACGACGGCGGACGGGTTGGTGGTGGTGGCCGCCACGT
TCGGGAGCGCCGAGGTGCACCGGTTGCCCGCTGATGAGGACGACGAGGCCACCGGCAGCCGCGGCGGTGAGGAGCGGAGG
CATCCACAGCAGCAGCCGCCGCAGACGGTGGCGGCCACGAGCGCCGTCGACGTGGGGCTGCTTGGGTACGGCGGCGGTGT
GGGGGTTGCCGGCGGTGCGAGTGGCGGGCAGGTGGGCCGCCACCAGCAGCAGCAGCAGCAGGCCGAGATGGTCTTGTGGG
CCCAGTCGCCAGGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis